Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0724 ATGGATTCTCCTCCTCCTTTATCACTAAACGTCGTCGGATCAGATACTATTACTACAGTTTCTAGTTCAATCACACCACCACCTCGCCGTTCATCTCCGTTACAGAATCTCAGCCCAAGCATCCTCATCATCGTAACGGTGCTCGCCGTTACCGTTATTGTATCCCTCGCTCTCTGTTTCCTTCTCCGTCATCTAAACCGCCGCTGTCTCCGCCGTCTTTCTCGTTCCTCCGCCGCGCCCTCTGTTTCTACCACGCCAATATTTACATCCAGCCGCCGAATCTCGCCGGAGCTACCGCAAAACTCTTCATCCTCCGCTTTCGTTATTGACTCTCTCCCGGTATTTACCTTCTCCTCCGTTAACCGCCGCTCTTCCACGGCCGCCGCCGATTGTGCGGTTTGCCTCTCGAAGTTCCACAAAGACGACCTCCTCCGCCTTCTCCCCCTCTGCTGCCACGCCTTCCACGCGGAATGCATCGACACTTGGCTTCAATCAAATCTCTCCTGTCCGCTCTGCCGATCCGACATTGTCGCCGTCGAATCGGACCTCGCCAAGATTTTCCGGCCGTCGTCCGCCGCCGGCAGTGACAGCTTCCGCCTCGAGATAGGGAACGTGAGCCGCCGCGGAACTCCGACTGATGCCGCAGCAACAGCCGCGCATTTCGGCGAATCGCGTAGCGGCGGCGGCGGCGTGAGGTCGAGGTCCTACTCCATTGGATCGTTCGAGTACTTTGTGGACGAGGAATCGGAGGTTCCGTACAGCCACGCTCACCGGAGAAGTTCCTCCGATCAGAAGGACGTAGACCTCTTGGCGCCGGCGGAACCGCCGGTAGGCCAGCAGGAAGCGAACCTCGCCGGCGAGGTTGGCGGCGTGAGGAGCTGGCTGAAGGATTATATGGATAGGATCTCTGCTTCCATATCGTCGCGAACGGCGTCGTTTCGTAGCTCTGGAAGATTCTTCAGTGGTCCTGGGAGTAGTCGCAGAAGCGACGCCGTTCCCGTCGGTTCAGATTACGACGTTGAAGGTAACAGAATTGGTGAGGAGATCACTGAAATGTTTCGTTGGCTTTCAGGGGTATGA 1080 0.5685 MDSPPPLSLNVVGSDTITTVSSSITPPPRRSSPLQNLSPSILIIVTVLAVTVIVSLALCFLLRHLNRRCLRRLSRSSAAPSVSTTPIFTSSRRISPELPQNSSSSAFVIDSLPVFTFSSVNRRSSTAAADCAVCLSKFHKDDLLRLLPLCCHAFHAECIDTWLQSNLSCPLCRSDIVAVESDLAKIFRPSSAAGSDSFRLEIGNVSRRGTPTDAAATAAHFGESRSGGGGVRSRSYSIGSFEYFVDEESEVPYSHAHRRSSSDQKDVDLLAPAEPPVGQQEANLAGEVGGVRSWLKDYMDRISASISSRTASFRSSGRFFSGPGSSRRSDAVPVGSDYDVEGNRIGEEITEMFRWLSGV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0724 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 3 328 - -
Aev09g0724 359 SUPERFAMILY RING/U-box 106 179 - -
Aev09g0724 359 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 178 IPR013083 -
Aev09g0724 359 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 3 328 - -
Aev09g0724 359 SMART ring_2 131 172 IPR001841 -
Aev09g0724 359 ProSiteProfiles Zinc finger RING-type profile. 131 173 IPR001841 -
Aev09g0724 359 CDD mRING-H2-C3H2C2D_ZSWM2 131 173 - -
Aev09g0724 359 Pfam Ring finger domain 130 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0724 Aev-Chr9 6797173 6798252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0724 17 182 C3H Transcription Factor Family AT4G28890 37.427 2.77e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0724 K10663 - gmx:100817751 400.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g0724 09 6797173 6798252 Aev09g0724 09 6797173 6798252 ECH