Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0623 ATGTCCTTATATTTTAAGGATAACAATTGTTTGACAATGGCAAAAGGTCCTTCTTCAGAAATTCGATTAAGGTCAAGGAAAGCAACTTCATCAGATTGTACTTGCTTTTTACGACCTGGGATTGACATATGTGTTCTAATAGTGCCTAAATGCTCTGATGATCTTGATGAATCTTCTCCTCAACCTGTGTGGGTTGATGCCAAAATCAAATCCATACAGAGGAGCCCCCATGACTTATATTGTTCATGTCAATATTATGTCAACTTCTATGTGAACCAAGGTTCAATTGGTACTCAAAGAACTCTTGTTAAGGAGGTTGAAATTGTTGGAATAAACCAAATTTCCATCCCCCAAAGGCTTGGCAATAATGCAATTGAAGATAGTCCTTACCGATGGGATTCAACTATGGATAGCTTCTCAATACCTCAAACTAAACTGCTTCATAGGAAATTCCTATCTGATATCTCATGGTTCATTGTTACATCTGTTTTAAAGAAGTTCTCATTCAATTTAAGATCTGTTGACAACATGATTGTGTATCAAGTTTTGGCAAGTTATGAAGCTAATAATGCTTATACACTCAATCATTCGTCTTTTATAAATGTTGTGAACTTCAAAGTAGACCAAAATGACATAGTAAAACCATTTGTTACTCAAGTTGATACATCTGGAATCAAGAAAATTGGCTATACAAATGATTTCATTTCCCCTGAAGGTGAAGCACCTCCATCTTTTAATGTCCAAGGTTTAAGGCGTTCTATGCGGTGCCATGTAGAACCTGAGCGTTACCAAGATTGCAATGCGTCCAATTTTAAGGATGTCGATTCTATTAGAGCATGGCAATACAAGGTAAGAGACGAGAAAAATGATGATGATGATGAGCCAGTACCACTAGCATCAGAATGTGGCTTAAGCAATAGAATAAAGGGGAATTCTGGCAAAGGAGCTATCATTCATCCAACAATAGAATCAAAAAATCATACTCCACTTTCTATCATTAATCCTTATAAAGGAGATCCCTTTCTGCATATGGATTGTTCTCTTAATAACAAGGGTGATGCAAATGAAATTTGGAATATAGATGATGAAGAAGAGGCTGTTGATGTTTCTTTAAGGGGCTATCAAATTTATGGTGTGTCTAGGAAGCGCAACAAGAGTTCATCTAGTGTAGATGATATGGACTATGAACCTATATCGGAAGGAAAAAACCCCAAAAATGGAGTTAAAGAGAAAAGATATCGGTCAACACTTTCAAGAAGTAGAAATGAAGATGATCAAGAAAGGACTTATAAAGATAGAAATATAAACTCAGCTGCCTACAAGGAAATGATAGATTCATATTTGAAGAATAATAAAATATCAAACAAGGAAGAACTAAATATAAGGAATCAATGGCCTGAAATAAGCAATTGTGAGTTGGAAAATGGAGAAGGAACATCTCTAGAGAAGGAAGATAAAGAAATATCTGAAATAGATAAGTTGTGGCAAGAGATGGATTCGTCATTGGTATCGATTTATCTTGAAGAAGATGTTGTTCCTGTTCATACTGGAAAAATATGTGATCACGACAATAGGTTGGATGAAGAGATTGGAATTTATTGTCTTAGATGTGGTGTTGAGAGCGTCGACATCACGAGTATCACACCAGACTTTTTGCCACGCGTAAGAAGGCACCATCAAGAGGAGGAGGAGCGGGAGAAGAAGAAAGAGGAGGAGGAAAAGATAATAAAAAATGCAGAACAAGAATTACAGAATCTAAAGGCTAATTGCAAACTTGCCAAAGCTATAGATTCTACTAATGAGCCTATACGTCAAGATTATGCCATTGAACCTATATCTCAAGAAAATGCTAAAATTTGGGAGTTAGTTCCGGGGCTAAGAGAAAAAATGCATGTTCACCAGAGGAGAGCCTTTGAATTTCTTTGGCAAAACATTGCAGGGTCTACAGATCCATCACAAATGGAAGCAAAATCCAAAGATAGTGGTGGGTGTGTGATTTCTCATTGTCCAGGAGCAGGAAAAACTTTCCTCATCATCGCCTTTCTTAAAAGCTTCTTGAAGCTATTCCCAGGAAAAAGGCCATTGGTGTTAGCTCCAAAAACCACATTATACACTTGGCATAAGGAGTTTGTCAAATGGGAGTTTCTTATTCCTGTGTATTTGATTCACGGCCGCGAATCACATGGAGAGTTGAAGAAAACATCATTGTCCATTCCTGGTGTTCCAAAGCCAACAAATGATGTGAATCATGCTTTGGATTGTTTAGAAAGGATACAAAAGTGGCGTGATCATCCTAGTGTTCTAGTTATGGGATACACTTCTTTTTTAGCAATGGTGAGAGATAATTCAAAGTATGAACATAGGAAGTACATGGCAAAAGAGATAAGAGAAAGCCCTGGGTTGCTAATACTTGATGAAGGACACAATCCAAGGAGCACCAAATCGAAGCTTAGAAAAGTTTTGATGACAGTAGAGACAGAGCATAGAGTGCTACTATCAGACAAAGAGATTATGGTAATAACTGGTGCACTTGAGCTTTTTGATAGAGGGAAAGTGATAGATAAGTTTGAAGACCCTTGTGGTGAATCAAAGGTGTTACTTGCTTCGATCACGGCTTGCGCCGAAGGGATTAGTCTCACTGCAGCATCGAGGGTTATTATGATGGATACAGAGTGGAACCCATCAAAGACTAAGCAAGCTATTGCAAGGGCTTTTAGGCCTGGTCAGCAAAAGATGGTTTATGTGTATCAGTTAATTGCTATAGAGTCCATTGAGGAAGATAAGAACAAGACAACCACATGGAAAGAGTGGGTTTCTAAAATAATTTTCAATGAGGAAGTTGTGGAACCTTCCCAATCTCAAGCACAAAATATTGAGGATGAGGTGCTCAGGGTGATGGTTAAGGATGACAAGTCTAAGGTATTCCATAAGATCATGACAATGAACATGGAAAAGCCTACTGACTCACCTTGA 2973 0.3777 MSLYFKDNNCLTMAKGPSSEIRLRSRKATSSDCTCFLRPGIDICVLIVPKCSDDLDESSPQPVWVDAKIKSIQRSPHDLYCSCQYYVNFYVNQGSIGTQRTLVKEVEIVGINQISIPQRLGNNAIEDSPYRWDSTMDSFSIPQTKLLHRKFLSDISWFIVTSVLKKFSFNLRSVDNMIVYQVLASYEANNAYTLNHSSFINVVNFKVDQNDIVKPFVTQVDTSGIKKIGYTNDFISPEGEAPPSFNVQGLRRSMRCHVEPERYQDCNASNFKDVDSIRAWQYKVRDEKNDDDDEPVPLASECGLSNRIKGNSGKGAIIHPTIESKNHTPLSIINPYKGDPFLHMDCSLNNKGDANEIWNIDDEEEAVDVSLRGYQIYGVSRKRNKSSSSVDDMDYEPISEGKNPKNGVKEKRYRSTLSRSRNEDDQERTYKDRNINSAAYKEMIDSYLKNNKISNKEELNIRNQWPEISNCELENGEGTSLEKEDKEISEIDKLWQEMDSSLVSIYLEEDVVPVHTGKICDHDNRLDEEIGIYCLRCGVESVDITSITPDFLPRVRRHHQEEEEREKKKEEEEKIIKNAEQELQNLKANCKLAKAIDSTNEPIRQDYAIEPISQENAKIWELVPGLREKMHVHQRRAFEFLWQNIAGSTDPSQMEAKSKDSGGCVISHCPGAGKTFLIIAFLKSFLKLFPGKRPLVLAPKTTLYTWHKEFVKWEFLIPVYLIHGRESHGELKKTSLSIPGVPKPTNDVNHALDCLERIQKWRDHPSVLVMGYTSFLAMVRDNSKYEHRKYMAKEIRESPGLLILDEGHNPRSTKSKLRKVLMTVETEHRVLLSDKEIMVITGALELFDRGKVIDKFEDPCGESKVLLASITACAEGISLTAASRVIMMDTEWNPSKTKQAIARAFRPGQQKMVYVYQLIAIESIEEDKNKTTTWKEWVSKIIFNEEVVEPSQSQAQNIEDEVLRVMVKDDKSKVFHKIMTMNMEKPTDSP* 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0623 990 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 747 966 IPR001650 -
Aev09g0623 990 Pfam SNF2-related domain 629 833 IPR000330 GO:0005524|GO:0140658
Aev09g0623 990 Coils Coil 558 596 - -
Aev09g0623 990 MobiDBLite consensus disorder prediction 381 434 - -
Aev09g0623 990 CDD SF2_C_SNF 836 919 - -
Aev09g0623 990 SMART helicmild6 811 908 IPR001650 -
Aev09g0623 990 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 834 981 - -
Aev09g0623 990 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 2 833 - -
Aev09g0623 990 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 834 981 IPR044567 GO:0080188
Aev09g0623 990 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 833 IPR044567 GO:0080188
Aev09g0623 990 SMART ultradead3 626 850 IPR014001 -
Aev09g0623 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 829 952 IPR027417 -
Aev09g0623 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 833 IPR027417 -
Aev09g0623 990 Gene3D - 599 834 IPR038718 -
Aev09g0623 990 Gene3D - 838 929 IPR027417 -
Aev09g0623 990 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 655 823 IPR014001 -
Aev09g0623 990 MobiDBLite consensus disorder prediction 385 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0623 Aev-Chr9 5533480 5538254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0623 801 926 RAD5 or RAD16-like Gene Family AT5G05130 38.462 9.41e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev09g0623 SNF2_N 1.6e-11 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0623 K10875 - cpap:110819231 775.778