Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0510 ATGACTAGAAAGAAGGTGAAACTTGCATTGATTGCTGATGATACTGCAAGAAAGATGTCTTATAAGAAAAGGAAGAAGGGTTTATTGAAGAAGATTGATGAACTTACTACCCTATGTGGGATCGAAGCGTGTGCTATTATATATAGCGACATTGATCTTGAGTTGCCAGAGCTTTGGCCATCCCCATTGGGTGTCCAAAGGGTGCTCTCCAAGTTCAGTAGGTACTCTCATTTGGATCAAAGCAAGAAAATGTTGAGCCAAGAAACATATATGATGCAAAGGGTTAAGAAGGCCAAAGAGAATTTGGAGAGAATGAGGAAGGGCAATAGAGAGAAGGAAATATCCTTACTCTTGTACCAATATCTCACCGAAGGTAGTATTCTGGACAATTTGAGTATGGTTGATCTCAATAATCTCGCATGGATGATTAATGAGAAGCAAAATGAAATCGACCGTAGGTTAAGCGCGCTTAACATAAACTCGGGTGAAGCCCAATCAAACCAAGAAGTTGTTGGAGAGAAACATGAAGAGGTTGCAAAAGCATATGATGAGGTAACCAATCAAGAACAAAATCATGGGCAAAGGGTTCTTGAGATGAACATGGATGCTTCCTCACAAGATATTCCATGGTACCTAAATATGATCAATGGTGGAGACGGTGAGAATCAATTGATGTCATTTGAAGAATTCAATTCCCTAAACAAGTGA 708 0.3955 MTRKKVKLALIADDTARKMSYKKRKKGLLKKIDELTTLCGIEACAIIYSDIDLELPELWPSPLGVQRVLSKFSRYSHLDQSKKMLSQETYMMQRVKKAKENLERMRKGNREKEISLLLYQYLTEGSILDNLSMVDLNNLAWMINEKQNEIDRRLSALNINSGEAQSNQEVVGEKHEEVAKAYDEVTNQEQNHGQRVLEMNMDASSQDIPWYLNMINGGDGENQLMSFEEFNSLNK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0510 235 Coils Coil 92 115 - -
Aev09g0510 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Aev09g0510 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev09g0510 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev09g0510 235 Gene3D - 13 113 IPR036879 GO:0003677|GO:0046983
Aev09g0510 235 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Aev09g0510 235 PANTHER MADS BOX PROTEIN 2 176 - -
Aev09g0510 235 Coils Coil 230 235 - -
Aev09g0510 235 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 176 - -
Aev09g0510 235 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Aev09g0510 235 ProSiteProfiles MADS-box domain profile. 1 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0510 Aev-Chr9 4542278 4542985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0510 1 162 Type I MADS-box Gene Family AT5G48670 51.852 1.36e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Aev09g0510 SRF-TF 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0510 - - gmx:100813231 219.935