Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0467 ATGCCTCCAAGAACGGTGAAGCGTGGCGCTGGGTCAGGTGGTGGAAGAAGGGGTGGAAGAGGTGGCAGGGGTGCCTCGAAGGCCGCGCAAAATCAGATTCAGCAAGAGCCTCAGAACCCTGAGGCTGGCTCAGAAGAGGTGATGAAGCTCGAGGAGAAGACGGTTATGGAGGAAGAACCTAAAGTCGAAGAGAACCCCGTTGTGGAAGAGAAACCAGTTGTTGTTGAGGAGGAGAAACCTGTTGTTGAGGAGAAAGCGATCGATGTGAACCAAATTGCTCCTGAGGCTGCAGAAAACACAGCAACAGGAACCACAAGCACCCACGTGCCTAATGGCTCTGCTCTGGCGAAAAACGAGGAAGAGGAGGTTAAGGAGTCGATAGATGAATATGAAAAAGATGAGCGCTTGGAATTGGAGGATAATTATCCCGAGTATGAACCTGAGGAGTATGGTGAACAAGATGAGGTTCATGAGGTGGTTGATGAAGTAGAGGAAGAAGGTGAAGATAATGCTGGCGAAGAAGAGGGTGATACGGGTGAGGAGGAAGTTGAAGATGTTCATGATGAAATTGAGGGTGATGAGGACGATGAGCATGCTGGTGAGGAGCACGAGCATGCAGAAGTAGATGTGGATGAAGAGGAACATAGGGAACTTGTAAAGGAGAGGCGGAAGCGGAAAGAATTTGAAGTTTTTGTCGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGAAAGGTTTTTGGAGAAGTTGGGGTGGTCACTGAAGTCAGGCTGATGATGAACCCTCAGACTAAAAAGAACAAAGGATTTGCTTTCTTGCGTTTTGAAACTGTGGAACAAGCAAAGAAAGCTGTAGCAGAGCTTAAAAATCCAGTGATTAATGGCAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACTCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTGAAGGAGAAGTTGAAACATTATGGAGTTACAAATGTCGAGGATTTGACTTTGGTAGAAGATAGTAATGATGAAGGAAAGAACCGTGGATTTGCATTTTTGGAATTTTCTTCTCGCTCAGATGCTATGGATGCATTTAAGCGACTTCAGAAGAGAGATATTGTGTTTGGAGTTGATAAGCCTGCAAAGGTTTCCTTTGCAGATTCCTTTATTGACCCGGGTGATGAAATTATGGCACAGGTCAAAACTGTGTTTATTGATGCACTGTCTCCTTCATGGGACGAAGATTATGTTCGAGATCTTCTTAAAAAATATGGGGAGATTGAAAAGATTGAACTTGCCAGGAACATGCCAGCTGCCCGAAGGAAGGACTATGGATTTGTTACATTTGGCACTCATGATGCTGCCGTCAGATGTGCTGATAGTATTACCGGTACAGAGTTGGGTGAAGGTGACAAGAAGGCAAAGGTCAGGGCTAGGCTATCAAGGCCACTTCAGAGAGGCCGTGGAAAGCATGTGAGTCGTGGGGATTATCGTCCTAGCCGTGGATCGGGAACAATGGCAAGGCCTTCATGGAGCCGACCTGCACCGCGTAGTTTTCCACCCCGTGGGGTAAGAGGAATTGGAAGTCGTGTTCCACCAGTTAGGCCAGTTAGCATGAGAGATAGACGTCCTGTCATGTCGGTGCCAGTGAGAAGCAGGCCAATGGCTCCTCCTCCATCTAGATCCTATGATAGGAGACAGGCTGTTCCTGCATATCCCAAAGTTAGCACGAAGAGAGATTATGGTCGTCGTGAGGATTTACCACCTCCAAGAAGTAGTAGAGTTGCTGCAGATTATGGCTCAAGAGTGGCTGCTGAAAGACGTCCATCTTACAGGGATTATCCTGCCCGTGGTGCTGGCTACTCTGATCTTCCGAGAAGTGCATCTCGTGCTGCACCCAGGAGAGGTTATGTGGATGATGGCTATGGACAACGATTTGAGAGGCCTCCTCCTCCCCCTCCCCCTCCACTTGTTAGTTACCGAGAAGGGCGGCCCCGTGACTATGATGCTTTGTCTGGCTCTAAACGTTCCTATGCTGCCATAGATGATGTTCCTTCACGATATGCGGATACTAGTGCTCGGCAACCTAGAGCGCGATTGGACTACGATTATGGTGGTAGTGCTTCACAGTATGGAGACGCTTATGGTGATAGGCTTGGACGATCTAGTATGGGGTATGGTAGCAGTAGCAGAAGTTCTATTTCTAGTCAAGATTCCCATGGGATGTATAGCAGTCGACAGGGCTTTAGTTATGGTGGAGGTTCTTATGGTGGTAGTGATGTTGGTGGTATGTACTCATCAAGTTATGGTGGTGATTACATTTCTCGGGGAAGTGATGTTGGTGGCAGCTCATATTCAACTATGTATCCTGGCAGGGGTGTGGGTGGTGGTAGCAGTTACATGGGTGGTGGTGGATCTGGCTCTTACTATTGA 2445 0.4761 MPPRTVKRGAGSGGGRRGGRGGRGASKAAQNQIQQEPQNPEAGSEEVMKLEEKTVMEEEPKVEENPVVEEKPVVVEEEKPVVEEKAIDVNQIAPEAAENTATGTTSTHVPNGSALAKNEEEEVKESIDEYEKDERLELEDNYPEYEPEEYGEQDEVHEVVDEVEEEGEDNAGEEEGDTGEEEVEDVHDEIEGDEDDEHAGEEHEHAEVDVDEEEHRELVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFETVEQAKKAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDLTLVEDSNDEGKNRGFAFLEFSSRSDAMDAFKRLQKRDIVFGVDKPAKVSFADSFIDPGDEIMAQVKTVFIDALSPSWDEDYVRDLLKKYGEIEKIELARNMPAARRKDYGFVTFGTHDAAVRCADSITGTELGEGDKKAKVRARLSRPLQRGRGKHVSRGDYRPSRGSGTMARPSWSRPAPRSFPPRGVRGIGSRVPPVRPVSMRDRRPVMSVPVRSRPMAPPPSRSYDRRQAVPAYPKVSTKRDYGRREDLPPPRSSRVAADYGSRVAAERRPSYRDYPARGAGYSDLPRSASRAAPRRGYVDDGYGQRFERPPPPPPPPLVSYREGRPRDYDALSGSKRSYAAIDDVPSRYADTSARQPRARLDYDYGGSASQYGDAYGDRLGRSSMGYGSSSRSSISSQDSHGMYSSRQGFSYGGGSYGGSDVGGMYSSSYGGDYISRGSDVGGSSYSTMYPGRGVGGGSSYMGGGGSGSYY* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0467 814 SMART rrm1_1 229 302 IPR000504 GO:0003723
Aev09g0467 814 SMART rrm1_1 406 481 IPR000504 GO:0003723
Aev09g0467 814 SMART rrm1_1 309 388 IPR000504 GO:0003723
Aev09g0467 814 MobiDBLite consensus disorder prediction 485 680 - -
Aev09g0467 814 SUPERFAMILY RNA-binding domain, RBD 229 374 IPR035979 GO:0003676
Aev09g0467 814 CDD RRM_SF 230 301 - -
Aev09g0467 814 Gene3D - 154 308 IPR012677 -
Aev09g0467 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 487 IPR000504 GO:0003723
Aev09g0467 814 MobiDBLite consensus disorder prediction 1 48 - -
Aev09g0467 814 CDD RRM_SF 407 481 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 96 113 - -
Aev09g0467 814 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 814 - -
Aev09g0467 814 Gene3D - 309 391 IPR012677 -
Aev09g0467 814 Gene3D - 395 513 IPR012677 -
Aev09g0467 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 392 IPR000504 GO:0003723
Aev09g0467 814 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Aev09g0467 814 MobiDBLite consensus disorder prediction 199 216 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 140 198 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 727 747 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 581 595 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 96 216 - -
Aev09g0467 814 SUPERFAMILY RNA-binding domain, RBD 400 508 IPR035979 GO:0003676
Aev09g0467 814 MobiDBLite consensus disorder prediction 650 664 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 27 41 - -
Aev09g0467 814 PANTHER RNA RECOGNITION MOTIF 1 814 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 115 139 - -
Aev09g0467 814 Coils Coil 113 136 - -
Aev09g0467 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Aev09g0467 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Aev09g0467 814 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 472 IPR000504 GO:0003723
Aev09g0467 814 CDD RRM_SF 310 377 - -
Aev09g0467 814 MobiDBLite consensus disorder prediction 726 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0467 Aev-Chr9 4120221 4124882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0467 223 486 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 2.85e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0467 - - gmx:100779340 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g0467 09 4120221 4124882 Aev09g0467 09 4120221 4124882 ECH