Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0427 ATGTCGACTCGGAAGAGCCGTGATAGTGATAGGGATAGGGAGAAGAGGGACCGCGATGGGCGGCGTCATGATAGGGAGTACAGTAGTGATTCTGATGACAGGTATGATAGAGAAAGGGAGAGGGAGAAGGAGAAAGAGAAGCGCAAAAGTAAAGATAAAGAGAAGGAGAAGGAGAAGGAAGAAAGAAGGTTGCGAGAGAAGAAAAGAGAAAAAGAAAGAGAAAGGGAAGATAAGGACAGAGAAAAGGAAAAGGAAAAGGAAAGGGAAAGGAGAGAGAGGGCCAGGGAGAAAGAAAGGGAAAGGGAAAAAGAAAGGGAAAGAGATAGAGAAAGAGAAAGGAGAGAGAGAGAGAGGGAAAAGGATAAGGATAGGAGGGAGCGCGAGCGAGAGAAGGAATCTGAGAGAGAAAGAGGGAGGAGAACACGTGACAGGGAGAAGGAAAAGCGGAGGGAAGTTGATCGTGAGTATAGTGATGACGATGATTCGAGGGAGAGGGAGAGGGATCGAAAGAGGCACAGGAAAGATGATGATGATTACAAGGGCAGGGACAGAGACAGGGAGAGGAGTTCCGGGAAGTCAAATAGGCAAACAGAGGATAATGAAGCGAGCCCGAGAAGAAAGAATGTTGAAGATGACTCGGATAAAGAGAGGAAACAACCTACATATGAAGAGGAGATAGAGGAAGAGAATAAGAGGTTGGATGAAGAGATGGAAAAGAGAAGGAGGAGGGTTCAGGAGTGGCAAGAGCTGAGGAGGAAGAAGGAGGAAGCTGAAAGAGAGAAACAAGGTGAAGCAAGTGTTGTTGAGGAGCCGAAGTTGGGAAAGGCATGGACACTTGAAGGAGAATCTGATGATGAAGAAGGACCTGGTACAGGGAAGCTGGATATGGCTATGGATGTAGATGGAGATGATAAAAGTGGTGATAAGGGACCCGGGGATTCAATGGTGGAGGACGGTGATAATGGAACAGCAGCTGCATCAGGTTTAGAAAATGGAAATGCCGGTGATGCAGATGATGAGATTGATCCATTGGATGCTTTCATGAATTCTATGGTTTTACCTGAAGTTGAAAAGCTGAACAATGCTGTTTCTTCTTCAGTAGCAGAGAAAACTGATGACAAGAAACACAAGGATAGAGGGGACGAACAAAGTCGTGGTGGACAGCAGAGGAAAGGTTCCAATAATAAATCTATTGGAAGAATAATTCAGGGGGAAGAGTCTGATTCCGATTATGCAGAGCTTGAAGTCGAGGGAGATGACCTAGATGAAGATGATGATGAGTTCATGAAAAGAGTGAAGAAGACGAAAGCTGAGAAACTTTCTATAGTTGACCATTCGAAAATTGATTATCAGCCTTTCAAGAAGAATTTTTATATTGAAGTGAAGGAGATCACGAGAATGACACCTGAAGAAGTTGCTGCCTACAGGAAGGAATTGGAGTTGAAGATACATGGGAAGGATGTTCCAAAGCCTGTGAAAACGTGGCATCAGACTGGACTCACTAGCAAGATTTTAGAGACAATAAGAAAGCTTAACTTTGAAAAGCCGATGCCTATTCAAGCTCAGGCACTACCTGTAATAATGAGTGGTCGAGACTGCATAGGCATTGCAAAAACTGGATCTGGCAAAACACTTGCTTTTGTTCTTCCTATGTTGAGGCACATCAAAGATCAGCCACCAGTTGCTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGGGAGCTTGTGCAACAGATTTACAGTGATATTAAGAAGTTTGGAAGGGTAGTGGGTCTCAGGTGTGTACCAGTCTACGGAGGTTCTGGTGTTGCTCAGCAAATTAGTGAGTTGAAACGTGGTGCTGAGATAGTAGTTTGTACTCCGGGTAGGATGATTGACATACTGTGCACCAGTAGTGGCAAAATAACTAACCTGCGCAGAGTTACTTACCTGGTCATGGATGAGGCTGATAGAATGTTTGACATGGGATTTGAACCCCAAATTACAAGAATCGTTCAGAATATTCGGCCCGATCGTCAAACTGTTCTCTTTTCTGCCACGTTCCCTCGTCAGGTTGAAATTCTGGCTCGTAAGGTTCTGAATAAACCTGTTGAAATACAAGTTGGTGGCAGGAGTGTTGTGAACAAGGACATAACACAGCTGGTTGAGGTGAGACCGGAGAATGAGAGGTTCTTGAGGCTCTTAGAGATATTGGGAGAATGGTACGAGAAGGGAAAGATTCTGATATTTGTCCACTCACAGGAGAAATGTGATGCTTTGTTCAAGGATATGCTCAGACATGGTTATCCTTGCCTCTCTCTTCATGGAGCCAAGGACCAGACGGACCGTGAATCCACAATTGCTGATTTCAAAAGCAATGTCTGCAATTTACTAATTGCGACAAGTATTGCTGCCAGGGGATTAGATGTCAAGGAGCTTGAGTTGGTGATCAATTTTGATGTTCCTAACCACTATGAAGATTATGTACATCGTGTTGGCCGAACTGGCCGAGCTGGACGAAAGGGCTGTGCTATTACTTTTATTTCGGAGGAAGAAGCAAGATATGCACCAGATCTGGCGAAAGCATTGGAGCTATCTGAGCAAGTTGTTCCTAATGATTTGAAAGCTCTTGCCGATGGCTTTATGGCAAAAGTGAACCAAGGGCTTGAGCAGGCGCACGGGACTGGTTATGGTGGCAGTGGCTTCAAATTTAATGAAGAAGAAGATGAGGTGAGGAGAGCGGCAAAGAAAGCGCAAGCCAAGGAGTACGGGTTTGAAGAAGACAAATCAGATTCTGAAGATGAAGATGAAGGTATTCGGAAGGCAGGAGGAGATATCTCACAGCATCCTGCTCTTGCTCATATTCTTGCTGCCTCGAAAGCATCAGCACCTGCAGTACCTAGTCCCATCTCAGCTGCACAGCTAATTTCTAATGGTGGACTTCCTGTTTCTTTGCCAGCCGTTCTTGGCCTCCAGACTACTACCGTCTTGCCTGGTACAGGGCTTCCCCTCACTACAAATGATGGGGCAGCTCGGGCAGCAATTGCCGCCATGAACCTACAGCATAACTTAGCTAAGATACAATCTGAGGCAATGCCTGAGCATTATGAAGCTGAACTAGAAATAAACGATTTCCCCCAAAATGCTCGTTGGAAAGTCACACACAAGGAAACTTTGGGTCCAATTTCTGAGTGGACAGGAGCAGCTATTACCACCAGGGGACAATATTTCCAACCTGGTAGAATCCCAGGACCTGGGGATCGCAAGCTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTAAAAAGAGCTAAAGCGGAGTTGAAGCGTGTGTTGGAAGACATTACGAATCAGGCTTTGCAACTTCCCGGTGGATCTCAACCAGGCAAATACTCTGTTGTTTAA 3396 0.4535 MSTRKSRDSDRDREKRDRDGRRHDREYSSDSDDRYDREREREKEKEKRKSKDKEKEKEKEERRLREKKREKEREREDKDREKEKEKERERRERAREKEREREKERERDRERERREREREKDKDRREREREKESERERGRRTRDREKEKRREVDREYSDDDDSRERERDRKRHRKDDDDYKGRDRDRERSSGKSNRQTEDNEASPRRKNVEDDSDKERKQPTYEEEIEEENKRLDEEMEKRRRRVQEWQELRRKKEEAEREKQGEASVVEEPKLGKAWTLEGESDDEEGPGTGKLDMAMDVDGDDKSGDKGPGDSMVEDGDNGTAAASGLENGNAGDADDEIDPLDAFMNSMVLPEVEKLNNAVSSSVAEKTDDKKHKDRGDEQSRGGQQRKGSNNKSIGRIIQGEESDSDYAELEVEGDDLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFKKNFYIEVKEITRMTPEEVAAYRKELELKIHGKDVPKPVKTWHQTGLTSKILETIRKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPIGLIMAPTRELVQQIYSDIKKFGRVVGLRCVPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDALFKDMLRHGYPCLSLHGAKDQTDRESTIADFKSNVCNLLIATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEEARYAPDLAKALELSEQVVPNDLKALADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAHILAASKASAPAVPSPISAAQLISNGGLPVSLPAVLGLQTTTVLPGTGLPLTTNDGAARAAIAAMNLQHNLAKIQSEAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFQPGRIPGPGDRKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGSQPGKYSVV* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0427 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 874 IPR027417 -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 408 425 - -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 368 386 - -
Aev09g0427 1131 Gene3D - 445 702 IPR027417 -
Aev09g0427 1131 Coils Coil 1095 1118 - -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 1 348 - -
Aev09g0427 1131 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 524 702 IPR014001 -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 362 425 - -
Aev09g0427 1131 Coils Coil 219 260 - -
Aev09g0427 1131 SMART helicmild6 754 835 IPR001650 -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 1 268 - -
Aev09g0427 1131 Coils Coil 37 133 - -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 909 940 - -
Aev09g0427 1131 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 648 656 IPR000629 -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 909 923 - -
Aev09g0427 1131 SMART ultradead3 512 717 IPR014001 -
Aev09g0427 1131 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 713 874 IPR001650 -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 387 402 - -
Aev09g0427 1131 CDD DEADc_DDX46 482 703 - -
Aev09g0427 1131 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 493 521 IPR014014 GO:0003724
Aev09g0427 1131 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 168 948 - -
Aev09g0427 1131 Gene3D - 703 877 IPR027417 -
Aev09g0427 1131 Pfam DEAD/DEAH box helicase 518 689 IPR011545 GO:0003676|GO:0005524
Aev09g0427 1131 Pfam Helicase conserved C-terminal domain 727 835 IPR001650 -
Aev09g0427 1131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 851 IPR027417 -
Aev09g0427 1131 CDD SF2_C_DEAD 714 844 - -
Aev09g0427 1131 MobiDBLite consensus disorder prediction 275 315 - -
Aev09g0427 1131 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 168 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0427 Aev-Chr9 3739721 3743116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0427 480 855 Eukaryotic Initiation Factors Gene Family AT3G19760 32.808 1.04e-57 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0427 K12811 - gmx:100784306 1509.2