Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0402 ATGGGATATCAATATTTGGTACGTTTCAAATACAAAGGAGTAGGTTCTAGCTTTGAAGTCATAGTGTATAACAAGAATGCTTCAAGAGTAGTAGAAGAACCAAGTTTGGGATCTAATGAAGTTGAGAATCATCATCATCATGTTAATAATGCTATGGACTTTTTTAAGGTTCTTTCTCATAGCAACTTTCAAGAAGAGCTTTTGCTTCCTGGGAGCCTCATCAGAGAAAATTGGGAAGGAATGATGTCAAATCCTATACTTCTCAAATTGCCAAATAACATTGAATTCAAAGTGCATTGGATTGAAAGTGATAATGATGCTAAAATTTGGCTGAAAAATGGATGGGAAAATTTTGCACAAGTTTGTTCCTTGAGACAAAATTACTTCTTGTTTTTTGACTATATTGGAGAGTCATGCTTTGAAGTTGTAATTTGTGATGAGAAAGGAGAAGAATTAGATTATTCAAGTTTAAGATGCCATGATGAAGAAGAAACCTCTGAAGAAAATCATCAAGTTACTGAAATACTAACTTCTAGTGGTAATGATGTTGAAATTGATCATAATGGTGAAAAAGTTGGAGAGCTTCCCAAGAGAAAGGAAACCGACACAAGAGCTGATAGAAGAAGTTCTCGCAATATCAGCACAAATCAAGAAACTATTCCAAAGGAGAAATCTTCAGAAGACAATTCATGTGGCAATGCATTTGAGAGAGCGTTGACTTTCCAGTCAAACTTAGAAAAAAATATTCCCAGCTTTATTCGAGATATAAGACCTTCATATGTCCGAGAGGATTTTGTGGTGATACCAAATGATTTCGGAAGAGATCATCACTTGAGTGCCTTAGAAGGTGACTCTATGATCAGAGTTGGTGAAGACATGGCTTGGCCTGTCAAGTTAAAATTGAGCAGATCCATTGAATATCGAGCCACTATTTGTAGTGGTTGGAGACCATTCTGCCAAAACTATGCCTTAAAAGTCAATGATGTATGTGTCTTTCAGATGACTCAAAGAAGACCTCTTTTCTTCAAAATTGAGATTTTCAGAGACCAATCATGTGGTGCCCAGAACTTGCAAGAGGAACAAAATCATGATGATGATATTCCATCAGAGACAGAGGGAGTTGGTGCACAAAGGAAGAAACTGGATAATGATCAACTTAGCAAAAGAAAAAGAAACAAGAATAATGATGATGATGGAATTCCAATGACAAGATTACTAAAAAGGGCTGATAATAAAAGTAATAATGGGAAAGTTAGGACAGATGAAGAAGCTACTCCAACAAAGAAATCAGTAAAAGACAGTGATTGCAGCAAAGCGAAGGAGAGAGCTGAGGCTTATGCTTCAAAGATAAATAATCCATACTTCATCCGTTATATCGAGCAATCATATGTACTGCACGATTTGCTGGTTATACCAAATCCTTTCGCGAAAGTTCACTTGGAAGGATTAGAAGAAGCAGATGCAATAATCAGAGCTTGTGATGAAGACATGAGTTGGCCTGTTAAGATAAAATTTAGCAGGTCCATCAGATATTATCGAGTCACTATGGGTTGTGGTTGGAAACCTTTCTGCCAAAAGTATGAGTTAGAAGTTGGTGATGTATGTGTCTTTCAGATGATTCAGAAGAGACCTCTTTCCTTCCAAGTTAAGATTATCAGAGGGAGTAGAGAACAACCATGTGCTGGCCAGCAATTGCAAGGGGCTGATAGTAAAAGATCAGTAGAAGATAGTGAATGCATCAAAGCAAAGGAGAGAGCTAAGGCTTTTGCTTCAAAGATAAATAATCCATACTTCATCTCTGATATCCAGCAATCATATCTACTATCCGGTTTTCTGGTTATACAAAATTGGTTCTCAAAAGCATTCTTGAATGGTTACAAAGGGATGGGAAGCATAGGAGTTTGGGGCGAGAAAGCTTGGGCAGTTAGGTTTGGTCCTTTCAATGGTGGGCGAACTACGGTTATCAGTGGTGGTGGCTGGAAATCGTTCTGTGAGGAATATGGGTTACAAGTTGGAGATGTTTGTGTATTTCAGAGAACAGAGGTAACTCCACCCTCATTCCAAGTTGAGATCTTCAGAGCCACAGAAGAAGAAGAAGAATCATATACTAATCGCCATTTCCAAGAAGACTCTGGTAGTTATAATATGCAGGACAATCAATTCCAGATTCAGATACACCAATCTCACCTCTTTAAGTCAACTACTGTGAACATACCAGCAAAATTTTGTAAAAGGCACAAGGAATTTCTAGGAGAAATAGTGAATTTGCAAGTTGGGGAAATGTTGTGGCCTGTCAAAGTGTTACTAAATCGCGGCGCGTTCTCCGAAGGCTGGTCTGAATTTGCGAGAGGATGCAACTTACGTCTTGGCGACGTTTGCCGGTTTAAGATCGTCGATGAAGAGAGTCTCATGTTCAAAGTTTCGATCACAAGAAATCGTTTCTGA 2445 0.3824 MGYQYLVRFKYKGVGSSFEVIVYNKNASRVVEEPSLGSNEVENHHHHVNNAMDFFKVLSHSNFQEELLLPGSLIRENWEGMMSNPILLKLPNNIEFKVHWIESDNDAKIWLKNGWENFAQVCSLRQNYFLFFDYIGESCFEVVICDEKGEELDYSSLRCHDEEETSEENHQVTEILTSSGNDVEIDHNGEKVGELPKRKETDTRADRRSSRNISTNQETIPKEKSSEDNSCGNAFERALTFQSNLEKNIPSFIRDIRPSYVREDFVVIPNDFGRDHHLSALEGDSMIRVGEDMAWPVKLKLSRSIEYRATICSGWRPFCQNYALKVNDVCVFQMTQRRPLFFKIEIFRDQSCGAQNLQEEQNHDDDIPSETEGVGAQRKKLDNDQLSKRKRNKNNDDDGIPMTRLLKRADNKSNNGKVRTDEEATPTKKSVKDSDCSKAKERAEAYASKINNPYFIRYIEQSYVLHDLLVIPNPFAKVHLEGLEEADAIIRACDEDMSWPVKIKFSRSIRYYRVTMGCGWKPFCQKYELEVGDVCVFQMIQKRPLSFQVKIIRGSREQPCAGQQLQGADSKRSVEDSECIKAKERAKAFASKINNPYFISDIQQSYLLSGFLVIQNWFSKAFLNGYKGMGSIGVWGEKAWAVRFGPFNGGRTTVISGGGWKSFCEEYGLQVGDVCVFQRTEVTPPSFQVEIFRATEEEEESYTNRHFQEDSGSYNMQDNQFQIQIHQSHLFKSTTVNIPAKFCKRHKEFLGEIVNLQVGEMLWPVKVLLNRGAFSEGWSEFARGCNLRLGDVCRFKIVDEESLMFKVSITRNRF* 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0402 814 CDD B3_DNA 453 553 IPR003340 GO:0003677
Aev09g0402 814 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 577 694 - -
Aev09g0402 814 SUPERFAMILY DNA-binding pseudobarrel domain 716 811 IPR015300 -
Aev09g0402 814 PANTHER B3 DOMAIN-CONTAINING 356 553 - -
Aev09g0402 814 CDD B3_DNA 596 693 IPR003340 GO:0003677
Aev09g0402 814 SUPERFAMILY DNA-binding pseudobarrel domain 592 694 IPR015300 -
Aev09g0402 814 MobiDBLite consensus disorder prediction 184 211 - -
Aev09g0402 814 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 702 812 - -
Aev09g0402 814 ProSiteProfiles B3 DNA-binding domain profile. 52 148 IPR003340 GO:0003677
Aev09g0402 814 CDD B3_DNA 721 811 IPR003340 GO:0003677
Aev09g0402 814 ProSiteProfiles B3 DNA-binding domain profile. 251 350 IPR003340 GO:0003677
Aev09g0402 814 MobiDBLite consensus disorder prediction 212 230 - -
Aev09g0402 814 PANTHER B3 DOMAIN-CONTAINING 702 812 - -
Aev09g0402 814 SMART B3_2 455 555 IPR003340 GO:0003677
Aev09g0402 814 SMART B3_2 721 813 IPR003340 GO:0003677
Aev09g0402 814 SMART B3_2 54 148 IPR003340 GO:0003677
Aev09g0402 814 SMART B3_2 597 695 IPR003340 GO:0003677
Aev09g0402 814 SMART B3_2 252 350 IPR003340 GO:0003677
Aev09g0402 814 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 47 349 - -
Aev09g0402 814 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 356 553 - -
Aev09g0402 814 Pfam B3 DNA binding domain 459 554 IPR003340 GO:0003677
Aev09g0402 814 Pfam B3 DNA binding domain 721 812 IPR003340 GO:0003677
Aev09g0402 814 Pfam B3 DNA binding domain 637 694 IPR003340 GO:0003677
Aev09g0402 814 Pfam B3 DNA binding domain 54 146 IPR003340 GO:0003677
Aev09g0402 814 Pfam B3 DNA binding domain 256 348 IPR003340 GO:0003677
Aev09g0402 814 PANTHER B3 DOMAIN-CONTAINING 577 694 - -
Aev09g0402 814 PANTHER B3 DOMAIN-CONTAINING 47 349 - -
Aev09g0402 814 SUPERFAMILY DNA-binding pseudobarrel domain 53 147 IPR015300 -
Aev09g0402 814 SUPERFAMILY DNA-binding pseudobarrel domain 449 553 IPR015300 -
Aev09g0402 814 Gene3D - 47 149 IPR015300 -
Aev09g0402 814 Gene3D - 231 351 IPR015300 -
Aev09g0402 814 Gene3D - 574 696 IPR015300 -
Aev09g0402 814 Gene3D - 697 813 IPR015300 -
Aev09g0402 814 Gene3D - 431 555 IPR015300 -
Aev09g0402 814 ProSiteProfiles B3 DNA-binding domain profile. 638 695 IPR003340 GO:0003677
Aev09g0402 814 CDD B3_DNA 54 146 IPR003340 GO:0003677
Aev09g0402 814 CDD B3_DNA 250 348 IPR003340 GO:0003677
Aev09g0402 814 ProSiteProfiles B3 DNA-binding domain profile. 454 555 IPR003340 GO:0003677
Aev09g0402 814 ProSiteProfiles B3 DNA-binding domain profile. 721 813 IPR003340 GO:0003677
Aev09g0402 814 Coils Coil 376 396 - -
Aev09g0402 814 MobiDBLite consensus disorder prediction 177 230 - -
Aev09g0402 814 MobiDBLite consensus disorder prediction 359 436 - -
Aev09g0402 814 SUPERFAMILY DNA-binding pseudobarrel domain 246 352 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0402 Aev-Chr9 3427964 3439441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0402 694 811 B3 DNA Binding Superfamily AT3G18990 27.500 1.62e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev09g0402 B3 1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0402 - - jre:108995281 187.193