Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0345 ATGGGGCCAAATGCGGGTTCTGTGGTATCATCGGCGGCGAAACAAGCGGAGCAGCTTAGAATCGATGGCAACGCTTACTTCAAGAAAGACCGTTTCGGTGCTGCCATCGATGCCTACACCGAGGCAATTACGCTATGCCCTAATGTTCCTGTGTACTGGACGAATCGTGCTCTGTGCCATCTAAAGCGCAATAATTGGGAGAGAGTTGAGGAAGATTGTCGGAAAGCAATTCAATTGGACAGCAATTCCGTTAAGGCCCACTATATGTTGGGACTTGCGTTGCTACAGAAAGAAGAACATACCAAGGGTATCAGAGAATTGGAAAAGGCTTTGGATCTTGGGAGAGGTGCCAATCCCAAGGGTTATATGGTAGAAGAAATATGGCGGGAGCTTGCAAGAGCAAAATACCTAGAGTGGGAACGAACATCCTCCAAGCGATCATGGGAATTGCAGAGCTTGAAAGAAGCTTGTGAGTCTGCTCTAAAGGAAAAACGTTTTCTCGATACGTACCAAATGGAAGGATTTATAGACGACGCTACTACTTCCCATTCTGAACAATTGGAGGTTTTGGAAAGAGTCTTCAATATAGCTGCAGAGGGTGACACACCTACTGAGGTGCCGGATTATCTATGCTGTAGAATCACACTTGATATTTTTCATGATCCCGTAATCACCCCAAGTGGAGTTACATATGAGAGGGCAGTGATTCTTGACCATCTGCTGAAGGTGGGTAAATTCGACCCGGTCACGCGGGAACCGCTTGATCCATCGCAATTAGTTCCAAACTTGGCCATCAAGGAAGCAGTGCAGGCATTCTTGGACAAACATGGGTGGGCCTACAAGATAGATTAA 852 0.466 MGPNAGSVVSSAAKQAEQLRIDGNAYFKKDRFGAAIDAYTEAITLCPNVPVYWTNRALCHLKRNNWERVEEDCRKAIQLDSNSVKAHYMLGLALLQKEEHTKGIRELEKALDLGRGANPKGYMVEEIWRELARAKYLEWERTSSKRSWELQSLKEACESALKEKRFLDTYQMEGFIDDATTSHSEQLEVLERVFNIAAEGDTPTEVPDYLCCRITLDIFHDPVITPSGVTYERAVILDHLLKVGKFDPVTREPLDPSQLVPNLAIKEAVQAFLDKHGWAYKID* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0345 283 Pfam Tetratricopeptide repeat 52 82 IPR001440 GO:0005515
Aev09g0345 283 Gene3D Tetratricopeptide repeat domain 8 146 IPR011990 GO:0005515
Aev09g0345 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 3 282 IPR045200 GO:0000209|GO:0061630
Aev09g0345 283 CDD RING-Ubox_CHIP 206 272 IPR045202 -
Aev09g0345 283 SUPERFAMILY TPR-like 13 134 IPR011990 GO:0005515
Aev09g0345 283 SMART Ubox_2 209 272 IPR003613 GO:0004842|GO:0016567
Aev09g0345 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 282 IPR013083 -
Aev09g0345 283 SMART tpr_5 50 83 IPR019734 GO:0005515
Aev09g0345 283 SMART tpr_5 16 49 IPR019734 GO:0005515
Aev09g0345 283 SMART tpr_5 84 117 IPR019734 GO:0005515
Aev09g0345 283 SUPERFAMILY RING/U-box 199 280 - -
Aev09g0345 283 Pfam Tetratricopeptide repeat 85 113 IPR019734 GO:0005515
Aev09g0345 283 Pfam Tetratricopeptide repeat 23 48 IPR019734 GO:0005515
Aev09g0345 283 ProSiteProfiles TPR repeat profile. 16 49 IPR019734 GO:0005515
Aev09g0345 283 ProSiteProfiles U-box domain profile. 205 279 IPR003613 GO:0004842|GO:0016567
Aev09g0345 283 PANTHER OS08G0113300 PROTEIN 3 282 - -
Aev09g0345 283 Pfam U-box domain 206 278 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0345 Aev-Chr9 2945680 2950782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0345 8 282 U-box Gene Family AT3G07370 70.182 1.16e-146 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0345 K09561 - gmx:100796519 510.76