Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev09g0017 ATGAAAATAGAAAAAGAGCGTGACGCATGTGCCGTTGACACGTTCATTCTGTGCAACAGCAACAGACGGAAGAGTGTGTGTGTTTCTCTCTCTCTCTCTCTCTCTAGGGTTTCACTCTCTCCACCGCACTCGAATCGGATCGCTGCCGTTTCACGGCGTCATTCCGATAACTCGGCCGCCATGAAGCTCACCGTTAAGACTCTTAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCCTCCGACACTATTATGGCTGTCAAGAAGAATATTGAAGATGTACAAGGCAAGGACAATTACCCATGTGGGCAACAGTTGCTGATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCGGAGAACAAGGTCTCTGAGGATGGATTTCTTGTTGTCATGCTCAGCAAGAGTAAAACAATGGGTTCTGCAGGGGCATCATCTGCTCAGCCTGCCAGCAATCCACTTACAACTGTATCAACATCAAATTCAACTCCTGCTCCTGAACCTCCCGTACAGACTCAGGCAGCAAACAATAGCACTTCTGGTACAAATGTCACAACTACAGATACAAATGTCTCTGTGGATACTTATGGTCAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATCCAACAAATTATGGACATGGGTGGTGGTAACTGGGACCGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTACAATAACCCAGAGCGTGCTATAGATTACTTGTACTCTGGAATCCCTGAAGCAACAGAAGTTGCTGTACCAGTTCCTCGCTTCCCAGGGAGTCAGACAACTGAAACAGCTGGGGCTACTGCTGGAGCAGTTTCTGGAGCACCTAACTCATCTCCCTTAAATATGTTCCCACAGGAGACAATTTCTGGTACTGGTACCGGACTTGGATCTCTTGACTTCCTCAGAAACAATGACCAGTTTCAAGCATTGCGCTCGTTGGTGCAATCGAATCCACAAATTTTACAGCCCGTGCTTCAGGAACTCGGAAAGCAGAATCCCAATCTTTTAAGACTGATTCAAGAGCATCACGCTGAGTTTCTCCAGTTGATAAATGAACCTGTTGACGGTTCTGACGGTGATATGTTTGACCAGCCAGAGCAAGAGATGCCTCATGCCATCAATGTGACTCCAGCTGAGCAAGAGGCAATTGCAAGGCTTGAGGCTATGGGATTTGATAGAGCCTCAGTGATAGAGGCATTTTTGGCTTGTGACCGTGATGAGCAATTGGCAGCCAACTACCTATTGGAGAACGCCGGAGATTTTGAGGATTAA 1302 0.4662 MKIEKERDACAVDTFILCNSNRRKSVCVSLSLSLSRVSLSPPHSNRIAAVSRRHSDNSAAMKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTMGSAGASSAQPASNPLTTVSTSNSTPAPEPPVQTQAANNSTSGTNVTTTDTNVSVDTYGQAASNLVAGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEATEVAVPVPRFPGSQTTETAGATAGAVSGAPNSSPLNMFPQETISGTGTGLGSLDFLRNNDQFQALRSLVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVDGSDGDMFDQPEQEMPHAINVTPAEQEAIARLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev09g0017 433 Gene3D - 380 428 - -
Aev09g0017 433 SUPERFAMILY UBA-like 367 430 IPR009060 GO:0005515
Aev09g0017 433 SMART uba_6 389 426 IPR015940 -
Aev09g0017 433 SMART uba_6 210 250 IPR015940 -
Aev09g0017 433 TIGRFAM rad23: UV excision repair protein Rad23 61 432 IPR004806 GO:0006289
Aev09g0017 433 Pfam XPC-binding domain 308 363 IPR015360 GO:0003684|GO:0006289|GO:0043161
Aev09g0017 433 Pfam UBA/TS-N domain 389 424 IPR015940 -
Aev09g0017 433 Pfam UBA/TS-N domain 210 248 IPR015940 -
Aev09g0017 433 SMART ubq_7 61 135 IPR000626 GO:0005515
Aev09g0017 433 MobiDBLite consensus disorder prediction 141 190 - -
Aev09g0017 433 Gene3D - 55 137 - -
Aev09g0017 433 ProSiteProfiles Ubiquitin domain profile. 61 139 IPR000626 GO:0005515
Aev09g0017 433 Gene3D - 203 253 - -
Aev09g0017 433 PRINTS DNA repair protein Rad23 signature 334 356 IPR004806 GO:0006289
Aev09g0017 433 PRINTS DNA repair protein Rad23 signature 415 430 IPR004806 GO:0006289
Aev09g0017 433 PRINTS DNA repair protein Rad23 signature 400 414 IPR004806 GO:0006289
Aev09g0017 433 PRINTS DNA repair protein Rad23 signature 383 399 IPR004806 GO:0006289
Aev09g0017 433 Gene3D - 299 364 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aev09g0017 433 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 208 251 IPR015940 -
Aev09g0017 433 PANTHER UBIQUITIN RECEPTOR RAD23A-RELATED 61 432 - -
Aev09g0017 433 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 387 427 IPR015940 -
Aev09g0017 433 SUPERFAMILY Ubiquitin-like 61 146 IPR029071 -
Aev09g0017 433 PANTHER UV EXCISION REPAIR PROTEIN RAD23 61 432 - -
Aev09g0017 433 CDD UBA1_Rad23_plant 204 253 - -
Aev09g0017 433 Pfam Ubiquitin family 63 136 IPR000626 GO:0005515
Aev09g0017 433 SUPERFAMILY XPC-binding domain 305 371 IPR036353 GO:0003684|GO:0006289|GO:0043161
Aev09g0017 433 SMART CBM 306 349 IPR006636 -
Aev09g0017 433 CDD Ubl_Rad23 61 134 - -
Aev09g0017 433 SUPERFAMILY UBA-like 207 258 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev09g0017 Aev-Chr9 146737 152909 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev09g0017 61 134 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.40e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev09g0017 K10839 - gmx:100819019 611.298