Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2717 ATGGCAGATGAAGCCAACAGATCTGCTTTCCTTGAAATTCAAGGTCGCATGATTGAGACTACGGGAAAACTAAAGCAGGTACAAAACCAGATGCGTTCCAAAGAAGCTGAAAAGAAGCGTGCCTTTTTGACCTTGGAGGAGCTGAAGCAGTTACCCGATGATACTAATGTTTACAAATCCATTGGGAGAACGTTTCTACTTGAGTCCAAGGCAACTTTAATGAATGAACAGGAGAACAAGTTCAAGGATAGTGAAGCTTCAATTAACTCATTACAGAGCTCAAAAGAATACTTGGAGAAGCAGATAGCAGAGGTCGAAAACAATTTGAGAGAGCTGTTACAACAAGATCCTGGTATTGCTCGTCAGATCATGTCGATGAATATGCTATCAAAATCCAAGCAAACACATTTCACCACTACTTTCTGTTCTCCAACTAGAAAGGCACTTGGCATCACAAGGCTGCTGGTGATTGCTTTTACTAGCATGGCATCAAGTAATCCATTTTTTGATGACATAAGGAGCAAATCTGATGTTGATCCTCCTCAAATTGAAGAGTCAACAGATGTTAGTGAATTAGTAAATGATCCTGCACCAGCTGCTCTTAAACCTAATGGAACTGTTTCAAGCAGTGTTCGTGAGCTGTTAGAGTGTCCCGTTTGCTTGAATGCCATGTACCCTCCTATCCACCAGTGTTCAAATGGTCACACCATATGCTCAGGCTGCAAGCCCAGGGTCCACAATCGGTGCCCTACTTGTAGACATGAGCTTGGCAACATCAGATGTTTGGCACTGGAGAAGGTTGCTGCTTCTTTGGAACTTCCATGTAAATATCAAGGTTTCGGGTGTATGGGTATATATCCATATTACAGCAAGCTAAAACATGAATCCCAATGTGCATATAGGCCATATAACTGTCCATATGCCGGTTCAGAATGCTCTGTTATGGGTGATATACCTTACCTAGTGGCCCATCTGAAAGATGATCACAAGGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACGTGGATGCTCACGGTTTTCAGCTGCTTCGGTCAGTATTTTTGTTTACACTTTGAAGCTTTTCAGCTAGGAAAAGCTCCTGTCTACATAGCCTTCTTGCGGTTTATGGGTGACGATAACGAGGCAAAGAATTATAGCTACAGCCTAGAGGTGGGTGGAAATGGGAGGAAGATGATTTGGCAGGGGGTGCCTAGAAGCATTAGGGACAGCCATCGCAAGGTTCGTGACAGTTTTGACGGCCTCATAATTCAAAGGAACATGGCTCTCTTCTTTTCTGGGGGCGACAGGAAGGAGTTGAAGCTACGGGTTACGGGCAGGATTTGGAAAGAACAGTGA 1398 0.4349 MADEANRSAFLEIQGRMIETTGKLKQVQNQMRSKEAEKKRAFLTLEELKQLPDDTNVYKSIGRTFLLESKATLMNEQENKFKDSEASINSLQSSKEYLEKQIAEVENNLRELLQQDPGIARQIMSMNMLSKSKQTHFTTTFCSPTRKALGITRLLVIAFTSMASSNPFFDDIRSKSDVDPPQIEESTDVSELVNDPAPAALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCMGIYPYYSKLKHESQCAYRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGKAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2717 465 SUPERFAMILY RING/U-box 209 257 - -
Aev08g2717 465 Gene3D - 8 117 IPR009053 -
Aev08g2717 465 ProSiteProfiles Zinc finger SIAH-type profile. 270 330 IPR013010 GO:0008270
Aev08g2717 465 Coils Coil 74 115 - -
Aev08g2717 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 268 IPR013083 -
Aev08g2717 465 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 326 458 IPR008974 GO:0005515
Aev08g2717 465 CDD Sina 331 459 - -
Aev08g2717 465 CDD RING-HC_SIAHs 215 253 - -
Aev08g2717 465 Coils Coil 17 51 - -
Aev08g2717 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 325 IPR013083 -
Aev08g2717 465 Pfam Prefoldin subunit 13 115 IPR002777 GO:0006457|GO:0016272|GO:0051082
Aev08g2717 465 SUPERFAMILY TRAF domain-like 270 462 - -
Aev08g2717 465 SUPERFAMILY Prefoldin 9 114 - -
Aev08g2717 465 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 168 465 - -
Aev08g2717 465 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 168 465 - -
Aev08g2717 465 Pfam Seven in absentia protein family 259 458 IPR018121 GO:0005737|GO:0006511|GO:0007275
Aev08g2717 465 ProSiteProfiles Zinc finger RING-type profile. 217 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2717 Aev-Chr8 25981118 25991104 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2717 208 465 C3H Transcription Factor Family AT2G41980 79.070 2.46e-160 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2717 K04506 - gmx:100793457 624.78