Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2612 ATGGTACAAGCAAGGAAGTTCAGAGGAGTTAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAGATTCGGCACCCTTTACTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCAGCAGCCAGAGCATATGACCAAGCAGCCATTCTCATGAATGGCCAAAATGCCAAAACCAATTTCACCTCCCTCTCTCCTCCTGACCACTCTTTCTTCTCCCCCAAGGCTCTCTCCGACCTTCTCAGTTCTAAGCTCAGGAAGTGCTGCAAGGACCCTTCTCCTTCCCTCACATGCCTCAGGCTTGATTCTGACAATTCCCACATTGGAGTCTGGCAGAAAGGAGCAGGCAGGCACTCTGACTCCAATTGGGTCATGAGGGTCCAGCTTGGGACGAAGAACAAACACAAACAACAGCCTCACTCCAATTTCTCCTCCTCCTCATCAGGGTCTTCTCCAATTGGGGCTAGTGGTGCTGATAATGATCTTCATCATGAAAATAATATTGGTGGATTGGAAGAAGAGAATAGAGTTGCCATGCAGATGATTGAGGAGCTTCTTAATTGGAACTATCCTTATGCTTCATCAACTACTACTGATAATATCAATCCCCTGCATCAGCAGCAGCAGGAAGATCAGAAAGGGAACCTTCCATGGCAGAGTTCTTGA 669 0.4888 MVQARKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFTSLSPPDHSFFSPKALSDLLSSKLRKCCKDPSPSLTCLRLDSDNSHIGVWQKGAGRHSDSNWVMRVQLGTKNKHKQQPHSNFSSSSSGSSPIGASGADNDLHHENNIGGLEEENRVAMQMIEELLNWNYPYASSTTTDNINPLHQQQQEDQKGNLPWQSS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2612 222 CDD AP2 6 62 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Aev08g2612 222 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 196 - -
Aev08g2612 222 MobiDBLite consensus disorder prediction 132 167 - -
Aev08g2612 222 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 196 - -
Aev08g2612 222 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Aev08g2612 222 SUPERFAMILY DNA-binding domain 6 63 IPR016177 GO:0003677
Aev08g2612 222 MobiDBLite consensus disorder prediction 132 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2612 Aev-Chr8 24620042 24620807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2612 1 196 AP2-EREBP Transcription Factor Family AT5G25390 55.172 2.05e-71 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev08g2612 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2612 - - lang:109326202 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g2612 08 24620042 24620807 Aev08g2612 08 24620042 24620807 ECH