Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2600 ATGGAGCTTCAATTAGGCCTTGCTCTCCCTACTCATGATCACATACAACAAGGATTGGATTGTACAAACATAGGATTGATGAAGTCAAAACAGGTGGAGTGTTCAGAATTGTGGAGACCCTGTTGCAGCAGCAGCAGTAGTAGCAGTGAAATTATTAGCAGAAAGCATTTCAAGAACAAGCGTAGCTTTGAAGATTACTCATTTGGAAATTCTTTGAAAACTTTGAATTTGCTTGTGTGGAGTGGACAGCCAAATGAGGATGATGATGATCGAAGTGGAAAGATGCAAAGAAACAACCACAATTCAAACAAGAATGAAGAAGATGAGAACCGTTTGGTGGGGTGGCCACCAATCAAATCATGGAGAAAGAAAGAACTGCATCAGCATCAATATCAATATGGAGCTGCAGGAAGAGGAATCAGGAACAACAATAATAGGGTATTATTGCAAGCTGATGATGCAGAGAATCAAAGTAGAGTTCCAAACTCTTTTTATGTCAAGGTTAATATGGAAGGGGTAACTATAGGAAGGAAGATTAATTTGAGGCTTTATGACTCTTATCAAACACTTACAAACCAGTTGATTACTATGTTTGCTAAATACCAAAAAATTGAGAAAGATGGAGCAACTTATACACTCACTTTTCAAAATGAACAAGGGGATTGGCTGATTGCAAGACATGTGCCATGGCAGTTGTTCATTGGTACGGTGCGGCGTTTGGCAATTTTAAGGAATGCAAATTAA 744 0.3871 MELQLGLALPTHDHIQQGLDCTNIGLMKSKQVECSELWRPCCSSSSSSSEIISRKHFKNKRSFEDYSFGNSLKTLNLLVWSGQPNEDDDDRSGKMQRNNHNSNKNEEDENRLVGWPPIKSWRKKELHQHQYQYGAAGRGIRNNNNRVLLQADDAENQSRVPNSFYVKVNMEGVTIGRKINLRLYDSYQTLTNQLITMFAKYQKIEKDGATYTLTFQNEQGDWLIARHVPWQLFIGTVRRLAILRNAN* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2600 247 MobiDBLite consensus disorder prediction 83 112 - -
Aev08g2600 247 MobiDBLite consensus disorder prediction 84 112 - -
Aev08g2600 247 Pfam AUX/IAA family 2 246 IPR033389 -
Aev08g2600 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 246 - -
Aev08g2600 247 ProSiteProfiles PB1 domain profile. 163 247 IPR000270 GO:0005515
Aev08g2600 247 SUPERFAMILY CAD & PB1 domains 158 240 - -
Aev08g2600 247 Gene3D - 159 247 - -
Aev08g2600 247 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 246 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2600 Aev-Chr8 24537440 24538557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2600 166 242 B3 DNA Binding Superfamily AT3G61830 30.769 3.27e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aev08g2600 AUX_IAA 4e-26 CL0072