Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2557 ATGGAAGATGAGAGCAACAATATTTCCAACAATTTGCCAAATGGGCTCATCACAGGCAGCCCTGAAAGCCCCCCTTGCTTAAAGACAATTAGCACCAACACCAACAACAAAGAACAAGATCGGTTTCTCCCAATAGCAAATGTTGGAAGGATCATGAAAAAGGCCATCCCAGCAAATGGGAAAATCTCAAAGGATGCAAAAGAGACAGTTCAGGAATGTGTCTCTGAGTTCATAAGCTTTGTCACAGGGGAAGCCTCCGACAAATGCCAGAGAGAGAAGAGAAAGACCATAAATGGTGATGATATCATTTGGGCCATTACTACATTAGGATTTGAGGACTATGTTGACCCTTTAAAATCCTATCTTCAGAAATATAGAGAGATTGAAGGAGAAAAGCTTAATATTCCAAAGCAACAACGTTCTGAACAGAGGCTACTACATCAACAACAAGTTCAAAATCATGACCAAAATAACAATAATAATAATATAGCTTTGAGTAGTCTATATCCTTCGCCAAATCTCATTTCTCAGCCTCCTTATGTCACAACAGATCAATTGTTTTCGTTACCATTCTCCCCAAATTCAATTCAGAAACAGTTACAGCCACAAGATCAGATTGATTCAGTGGGCCAATGGTAA 639 0.3928 MEDESNNISNNLPNGLITGSPESPPCLKTISTNTNNKEQDRFLPIANVGRIMKKAIPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNIPKQQRSEQRLLHQQQVQNHDQNNNNNNIALSSLYPSPNLISQPPYVTTDQLFSLPFSPNSIQKQLQPQDQIDSVGQW* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2557 212 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Aev08g2557 212 SUPERFAMILY Histone-fold 39 150 IPR009072 GO:0046982
Aev08g2557 212 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aev08g2557 212 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 28 202 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aev08g2557 212 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Aev08g2557 212 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Aev08g2557 212 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Aev08g2557 212 MobiDBLite consensus disorder prediction 1 23 - -
Aev08g2557 212 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-7 28 202 - -
Aev08g2557 212 Gene3D Histone, subunit A 30 165 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2557 Aev-Chr8 24242055 24242693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2557 1 212 CCAAT-HAP3 Transcription Factor Family AT2G13570 59.821 4.00e-72 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aev08g2557 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2557 K08065 - gmx:100780647 305.449