Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2461 ATGCCTTTTGAAGTGATGGACCAGAGGGGTGTTTCTCCCTCATCTCACTTTTTTGATGATATGTCCTTTCCTTCCGAGAATGTTGGATCACGGAAGTCAAAATCGATTCATGACCAATACCCACAAGGAAAGAATGAAACTGCAGCATCACCTGGCAGCATTTTGAATGCTTCATCACCTCTTCAAATGAATGCAAAAAAAGGCTTGCCAACGTCACAGACTAGTTTATCTGGGGAAATTATGGAAAACATGCATTTTGGTGGAGAAGGAGGCAATGTGGATGTTCTGAAGAGTTCCAAGGAATCATTTAATTATCATCCAAGATCATGGTCTGATGTGCGTATGCAGCCAGCTTCTAGCTCCTATGGTTTAATCGGGAATAAGATTGTCGCCAATGCTGCCTCTCGTGAAAGCAGTCTATTCTCGAGCTCACTGTCTGATATATTTTGCCAGAAGTTGAGGTTATATGGGAATGCTGTTCAGCCTGACCAGCCCGTTACTGTTGGTTCCCTTCCTGAGGAAGAACCGTACAAGTCTCTTGAAGAAATTGAGGCTGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTCACTGATGAATTTGGATGCAGTGCTCAAGCCAGAACTAGTGATGATTTTGAAGATTTTGATTTGTTTAGCAGTGGAGGAGGCATGGAATTGGAAGGAGATGAGCATCTAGTTTCAGGAAAAAGAACCAGTTTCATGGAAGGAGATCTTGGTCACTTTGGATCCAAAGGAAAAATTCCTTTTGGTGAACAATCGTCTAGAACACTTTTTGTTAGAAACATTAATAGCAATGTAGAAGACTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGTACCATTTATACTGCCTGCAAGCACCGTGGGTTTGTTATGATTTCTTATTATGATCTAAGGGCAGCACAGAATGCAATGAAAGCACTTCAAAATAAGTCAATGAGGTCTAGGCAGCTTGATATACACTATTCAATTCCAAAGGGCAATGCTCCAGAGAAGGATATTGGCCATGCTACTTTGATGATATCTGGCCTTGATTCATCTGTTTTGAATGATGAACTTAAACAAATTTTTGGACTTTATGGAGAAATTAAAGATATCTATGAATCTCCTGAACTGAATCATGTCAAATTTATCGAGTTTTATGATCTGCGAGCTGCAGAAGCTTCTCTTGTAGCATTGAACAGGATTTGCATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGTTTGCAACATGTCTGATGCAGCAGTCTCAGAAGGGACAAGATGAAGCTGATTTTGGCCTTATTAATCTTAATGATAACTTATTATTAAGACAGAAGGCAACATCATCTTCTGGAGTAACTGCATCTGGTGGCGGCTTGGAGAGTGGATATAACCCAGGGTTTCAATCTGCTAAAAGGCTACCTCTGAATGCTTTTGTTGATAACACATTCTTTCCTGTGAACTCTAGCATTCACAAGACAGCAAGAGGGGCATCTGGTGGAAATGTATCTGGAGTTTTTGAGTCCGCAAATGTTGATGCAATGAAATTTGGATCTATTCCGAGGTTCCATCCTCATTCATTACCTGAATATCATCATGATAGCTTAGCTAATGGTAGTCCTTACAACTTATCAAGCACCATTAGCAACATGGCTGCCAATATTGGTACAGGATCAGCAGAAGTGTCTGACAGCAGGCATATTCAGGGAATAGGCTCACCCGGGAACCTATCAGAATTTACTGCAGTAGCCAACGGGAGCCGCCCACAACAGGGACTTTATCATGTGTGGAATAGTTCTAACTTGCATCAGCAACCTCCATCAAATGGCATTCTTTGGCAGAAAACACCATCTTTTATTAATGGTGCTCGTGCTCCTGGTCTTCAACAGATGACCAGCTTTCCTAGGACACCGCCTCATGTGCTCAGAGCATCACATATTGACCACCATGTTGGATCAGCACCCGTTGTTACGGCCTCACCCTGGGAAAGGCAACATTCTTACTTGGGAGAGTCTCCTGAAGCTTCTGGTTTTCGAATGGGCTCTCTAGGAAGTGCAGGATTTCATGGAAACTGGCAGTTGCATCCTCAAGAGTTTTCTTCTCACAACATATTTCCTCATGTTGGTGGAAATGGTACTGAATTGGCATCCAGTGCTGGGCAAGGTTCTCCTAAGCACTTGACACATTTTTTACCTGGGAGACTTCCCATGACTTCAATGTCAAAATTTGACTCTGCCAATGAACGAATGAGAAGCCTCTATCAACGTAGAAGTGATGCAAACACTAACAGTGCTGATAAAAAACAATATGAGCTTGACCTAGGCCGTATATTGCGTGGGGAAGACAACCGAACGACACTCATGATAAAAAATATTCCAAACAAGTATACCTCAAAGATGCTTCTTGCTGCTATTGATGAGCAATGTCGGGGTACTTATGATTTTCTGTATTTGCCAATTGACTTCAAGAACAAATGTAATGTCGGCTATGCATTCATCAATATGATTGATCCTGCTCAAATCATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAGTTTAACAGTGAAAAGGTAGCTGTACTTGCATATGCTAGAATTCAAGGAAAAGCTGCTCTCATTGCTCATTTCCAGAATTCAAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTCCACACTGACGGGCCAAATGCCGGAGATCCGGAGCCTTTCCCCCTGGGTAACAACATTAGAACAAGGCCTGGAAAATCTCGCTCAAGCGGTAACGAGGAGAATCGAGGCCAAGGGAGCTCTTCAGCCGTTGCAAGCGGGGAGGAACCTGCTAATGGGATAGAGTCTTCACTGAGTTTATCATGA 2910 0.4261 MPFEVMDQRGVSPSSHFFDDMSFPSENVGSRKSKSIHDQYPQGKNETAASPGSILNASSPLQMNAKKGLPTSQTSLSGEIMENMHFGGEGGNVDVLKSSKESFNYHPRSWSDVRMQPASSSYGLIGNKIVANAASRESSLFSSSLSDIFCQKLRLYGNAVQPDQPVTVGSLPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTDEFGCSAQARTSDDFEDFDLFSSGGGMELEGDEHLVSGKRTSFMEGDLGHFGSKGKIPFGEQSSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMKALQNKSMRSRQLDIHYSIPKGNAPEKDIGHATLMISGLDSSVLNDELKQIFGLYGEIKDIYESPELNHVKFIEFYDLRAAEASLVALNRICIAGKQIKLEPGHPRFATCLMQQSQKGQDEADFGLINLNDNLLLRQKATSSSGVTASGGGLESGYNPGFQSAKRLPLNAFVDNTFFPVNSSIHKTARGASGGNVSGVFESANVDAMKFGSIPRFHPHSLPEYHHDSLANGSPYNLSSTISNMAANIGTGSAEVSDSRHIQGIGSPGNLSEFTAVANGSRPQQGLYHVWNSSNLHQQPPSNGILWQKTPSFINGARAPGLQQMTSFPRTPPHVLRASHIDHHVGSAPVVTASPWERQHSYLGESPEASGFRMGSLGSAGFHGNWQLHPQEFSSHNIFPHVGGNGTELASSAGQGSPKHLTHFLPGRLPMTSMSKFDSANERMRSLYQRRSDANTNSADKKQYELDLGRILRGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVAVLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPLGNNIRTRPGKSRSSGNEENRGQGSSSAVASGEEPANGIESSLSLS* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2461 969 MobiDBLite consensus disorder prediction 930 969 - -
Aev08g2461 969 MobiDBLite consensus disorder prediction 40 73 - -
Aev08g2461 969 SMART rrm1_1 354 422 IPR000504 GO:0003723
Aev08g2461 969 SMART rrm1_1 269 337 IPR000504 GO:0003723
Aev08g2461 969 SMART rrm1_1 799 877 IPR000504 GO:0003723
Aev08g2461 969 CDD RRM3_MEI2_like 800 885 IPR034454 -
Aev08g2461 969 MobiDBLite consensus disorder prediction 908 969 - -
Aev08g2461 969 Gene3D - 262 349 IPR012677 -
Aev08g2461 969 Coils Coil 314 334 - -
Aev08g2461 969 SUPERFAMILY RNA-binding domain, RBD 799 884 IPR035979 GO:0003676
Aev08g2461 969 Pfam RNA recognition motif 2 797 893 IPR007201 -
Aev08g2461 969 MobiDBLite consensus disorder prediction 1 73 - -
Aev08g2461 969 SUPERFAMILY RNA-binding domain, RBD 265 424 IPR035979 GO:0003676
Aev08g2461 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 268 341 IPR000504 GO:0003723
Aev08g2461 969 PANTHER RNA RECOGNITION MOTIF 2, NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 2 964 - -
Aev08g2461 969 Gene3D - 350 445 IPR012677 -
Aev08g2461 969 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 426 IPR000504 GO:0003723
Aev08g2461 969 CDD RRM1_MEI2_like 267 342 IPR034453 -
Aev08g2461 969 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 964 - -
Aev08g2461 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 270 334 IPR000504 GO:0003723
Aev08g2461 969 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 420 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2461 Aev-Chr8 23502777 23508826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2461 263 419 Eukaryotic Initiation Factors Gene Family AT3G16380 23.596 2.27e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2461 - - aprc:113865455 1486.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g2461 08 23502777 23508826 Aev08g2461 08 23502777 23508826 ECH
Aev03g2996 03 29022127 29027603 Aev08g2461 08 23502777 23508826 PCT