Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2456 ATGTTCCGCCAACAGCTGCAGAGCATGGAAGACAATGCAGAATCGTTACGCTCAAGATGCTGGAAGTTCTTCAAAGGCTGCCGCAAATACACGGAAGGGCTTGGAGAGTCATATGATGGAGACATCACATTCGCAAATGCCCTTGAAAATTTTGGAGGAGACCATACTGATCCTCTTTTTTTAACTTTGGGAGGACCTGTTATGACCAAATTCACTGTTGCTTTGAAAGAAATCAGTTCATACAAGGAGCTTCTTCGCTCTGAGGTGGAGCACATGCTAAATGACCGGTTACTGAACATTCTGAATGTCGAAATCCTCGATGTCAAGGAAGCTCGAAGACGTTTCGACAAAGCTTCCATTGCATATGACCAGGCTCGCGAGAAATTTATGTCATTGAGAAAAAGTACTAGGGCGGATATTGCCATGGTTATAGAGGAGGAACTGCACCATGCAAGAACCACATTTGAAGAAGCTCGTTTCAATCTGGTTAGTGCTCTGCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTCTGGAGGCTATCACAGGAGTAATGGATGCTCATCTTCGATATTTTCGACAGGGATATGAGCTATTACATGAATTGGAGCCTTTCATTGTTGAGGTTTTGTCTTACTCGCAAAAGGCGAGAGAAAGTCACAATGAGGAGCAGATTTCTCTATGTGAAAGAATGGTAGAGTACAGGAAACTTATTCATCAAGAAAGTAAGTTGTCCTTGAAGGGCCCTCATGGTGCTCCTAGTGGAGATACCGTGCAACCTTTTTCTAAGATGTCAAACGGTGTTCTAGATGCAATAACAGAATCTGTTGCGAATGGAAAGGTTCAAGTCATTCGAGAAGGGTATCTCTCAAAACGCTCCTCCAATTTGAGGGGTGACTGGAAGAGAAGATATTTCGTTCTGGATAGTCGCGGAGTGCTTTACTACTATCGTAAACCGAGGACAGGGATGCAAGGTAGCAATCAAGGACCATCTCAGAGGAATTCAGGTACTGATAATGCTTCTGGCATTCTGAGTCGGTTGCTTTCTTCACATAACCCTGCAGTCGTCAATGATGAAAAGGCCGGTGTTCGCCATACATTAAACCTGCTGACATCAACAATCAAGATTGATGCTGAACAGACAGATTTAAGATTCTGCTTCAGGATCATTTCACCAGCAAAGATATATACATTACAGGCAGAAAATGCCCTTGACCAGATGGATTGGATGGAAAAGATAACCGGAGTCATTGCCTCCTTGTTGAGTGTACAGACACTGGGAATGCCTCTCTTACCTATCTCGGGAAGCGGCGACTCTGACACTTCAAGCACAAGCGATTCATTACAAAGTCTCCCTGATGATGAAATGGCAGTAAGTGCAGATTTTGCAAACAAAGTCAATAACATCACCCCTTATAGGCAATCTAATAAAGGCTTGCTGCGGAATAGGCTCAGCATGAAAAGTGAAAAGCCGATCGATGTTCTTAGAAGGGTTAGCGGCAATGACAGATGTGCTGATTGTGGTAAACCAGAACCAGACTGGGCTTCCTTAAACCTCGGCATCCTCATATGCATCGAATGTTCCGGTGTACATCGTAATCTTGGTGTACATGTATCAAAAGTAAGATCACTGAATCTTGATGTGAAAGTATGGGATTCATCTGTCTTAACCATGTTTCAGTCACTAGGAAATCTCTTTGCAAACTCAGTTTGGGAGGAGCAATTGCATTCGGCAAGTACTTCTCTAACTGATGAAACTCCTGATGGTTTAACCAAGGCCAACAGAAACATGTTACTTCGTGCAAAGAAACCAGAACATGATGACCCCATTTCACTAAAGGAGAGGTTCATTCATGCAAAGTATTCGGAGAAAGTCTTTGTTCGCCGGAAGCCGAAAAGCAACCTAATCCTCTCATCGGCACAACAATTGTGGGAAAGCATCATTGCCGATGACAAGAAAGCAGTGTACCGGCATATCGTCAAGAACAATGTGGATGTCAATTCTGTCAATGGAAAAGCATTGCAGGGAGATTCTCTGAACATGCCTTCTCCAAGTGACTCAAGCATGTCATCTCAAAGTAAAAGGCAACAACAAATGGAGGACATACAAGATGGTTCAAGTGTGCTTCACCTAGCATGCTTAACCTGTGATGCTGGAATGGTGGAGCTTCTCCTACAATATGGTGCAGATATAAATGCCGTCGATTCGAAGGGTCGAACACCACTACATTACTGCATTATGAGAGGGAATGTTACAACTGCAAAAGCACTTATAGCAAGAGGTGCCAATCCAAATGTCTTGGACAAAGCAGGGAACACTCCTCTTAAGCTAGCAGCAGAACCAAGCAATGAAATTATTGCTCTCTTATCAGCAACAAGTAGATAA 2385 0.4327 MFRQQLQSMEDNAESLRSRCWKFFKGCRKYTEGLGESYDGDITFANALENFGGDHTDPLFLTLGGPVMTKFTVALKEISSYKELLRSEVEHMLNDRLLNILNVEILDVKEARRRFDKASIAYDQAREKFMSLRKSTRADIAMVIEEELHHARTTFEEARFNLVSALHNVEAKKRFEFLEAITGVMDAHLRYFRQGYELLHELEPFIVEVLSYSQKARESHNEEQISLCERMVEYRKLIHQESKLSLKGPHGAPSGDTVQPFSKMSNGVLDAITESVANGKVQVIREGYLSKRSSNLRGDWKRRYFVLDSRGVLYYYRKPRTGMQGSNQGPSQRNSGTDNASGILSRLLSSHNPAVVNDEKAGVRHTLNLLTSTIKIDAEQTDLRFCFRIISPAKIYTLQAENALDQMDWMEKITGVIASLLSVQTLGMPLLPISGSGDSDTSSTSDSLQSLPDDEMAVSADFANKVNNITPYRQSNKGLLRNRLSMKSEKPIDVLRRVSGNDRCADCGKPEPDWASLNLGILICIECSGVHRNLGVHVSKVRSLNLDVKVWDSSVLTMFQSLGNLFANSVWEEQLHSASTSLTDETPDGLTKANRNMLLRAKKPEHDDPISLKERFIHAKYSEKVFVRRKPKSNLILSSAQQLWESIIADDKKAVYRHIVKNNVDVNSVNGKALQGDSLNMPSPSDSSMSSQSKRQQQMEDIQDGSSVLHLACLTCDAGMVELLLQYGADINAVDSKGRTPLHYCIMRGNVTTAKALIARGANPNVLDKAGNTPLKLAAEPSNEIIALLSATSR* 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2456 794 CDD PH_ACAP 285 422 - -
Aev08g2456 794 MobiDBLite consensus disorder prediction 321 342 - -
Aev08g2456 794 SMART 5bar 1 208 IPR004148 GO:0005515|GO:0005737
Aev08g2456 794 MobiDBLite consensus disorder prediction 320 342 - -
Aev08g2456 794 CDD ArfGap 492 621 - -
Aev08g2456 794 Gene3D Arfaptin homology (AH) domain/BAR domain 1 241 IPR027267 -
Aev08g2456 794 SUPERFAMILY Ankyrin repeat 658 783 IPR036770 -
Aev08g2456 794 ProSiteProfiles Ankyrin repeat profile. 737 769 IPR002110 GO:0005515
Aev08g2456 794 Pfam PH domain 283 417 IPR001849 -
Aev08g2456 794 CDD BAR_SFC_plant 5 205 IPR035670 -
Aev08g2456 794 Coils Coil 108 128 - -
Aev08g2456 794 Pfam BAR domain of APPL family 2 223 - -
Aev08g2456 794 ProSiteProfiles BAR domain profile. 1 215 IPR004148 GO:0005515|GO:0005737
Aev08g2456 794 SMART ANK_2a 737 766 IPR002110 GO:0005515
Aev08g2456 794 SMART ANK_2a 704 733 IPR002110 GO:0005515
Aev08g2456 794 SUPERFAMILY ArfGap/RecO-like zinc finger 489 629 IPR037278 -
Aev08g2456 794 SUPERFAMILY PH domain-like 282 438 - -
Aev08g2456 794 SMART arf_gap_3 489 634 IPR001164 GO:0005096
Aev08g2456 794 ProSiteProfiles Ankyrin repeat profile. 704 736 IPR002110 GO:0005515
Aev08g2456 794 Gene3D - 274 426 IPR011993 -
Aev08g2456 794 MobiDBLite consensus disorder prediction 671 701 - -
Aev08g2456 794 Pfam Putative GTPase activating protein for Arf 492 629 IPR001164 GO:0005096
Aev08g2456 794 ProSiteProfiles PH domain profile. 282 418 IPR001849 -
Aev08g2456 794 PRINTS HIV Rev interacting protein signature 501 520 IPR001164 GO:0005096
Aev08g2456 794 PRINTS HIV Rev interacting protein signature 520 537 IPR001164 GO:0005096
Aev08g2456 794 PRINTS HIV Rev interacting protein signature 543 564 IPR001164 GO:0005096
Aev08g2456 794 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD1 1 789 - -
Aev08g2456 794 Gene3D Arf GTPase activating protein 472 635 IPR038508 -
Aev08g2456 794 PANTHER CENTAURIN/ARF 1 789 IPR045258 GO:0005096
Aev08g2456 794 ProSiteProfiles ARF GTPase-activating proteins domain profile. 489 634 IPR001164 GO:0005096
Aev08g2456 794 Gene3D - 641 793 IPR036770 -
Aev08g2456 794 Pfam Ankyrin repeats (many copies) 706 758 IPR002110 GO:0005515
Aev08g2456 794 ProSiteProfiles Ankyrin repeat region circular profile. 737 769 - -
Aev08g2456 794 SUPERFAMILY BAR/IMD domain-like 1 305 IPR027267 -
Aev08g2456 794 SMART PH_update 283 420 IPR001849 -
Aev08g2456 794 ProSiteProfiles Ankyrin repeat region circular profile. 704 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2456 Aev-Chr8 23456248 23462756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2456 484 606 C2H2 Transcription Factor Family AT3G07940 39.683 8.37e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2456 K12489 - gmx:100797073 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g2456 08 23456248 23462756 Aev08g2456 08 23456248 23462756 ECH
Aev03g2999 03 29044252 29051171 Aev08g2456 08 23456248 23462756 PCT