Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev08g2454 | ATGATGTCTTGGACAATGGATGGCAGAGAAGAGCAAGAGAATAGTGCTTCATGGAACAGAAACTCATCATCATCATCCAAACCACCAAACATGGAAAGGGATGAGATGATGATGAGTTCACTCTGTGGTTTCAAGCCCATGATGGAGATTGTTGCTGATGATGAATGGTACATGTCCAACACCAACACCACCACCACCATCCTCCATAACCACCACCAACCAGACATGATGATGATGAGGGACATGGCGGCTTTCTCACCCACAAACTTCGGTGACCCTTCAGATAACAGCAACAACCTTCTCCTCCATCACCACCCTGTGGACTCTTCATCTTCTTGCTCTCCCTCACCTTCTATGTTCACCAACCTTGGTGTTGGTGCTGACCCTTCTGCATCTCATGTTCATCAGTACTTTCTCCCTCCTCCTCCTCCTTCAAATCCTAAGGCCACTACCTTGCTCCTAAGCAACAATAACAACAACAATAACCCTTTTGAAATTGGTTGTGAAATGGGGTTCCTTGAGCCTCAAGGTTCCACCAATTCACCAGTACTACAAAGAGGCCCTTCTCCATCTTCTTCTACCCTTTTGGGTGGCTTGATCCCTGACTTGGCCTCAAAGAACCAGTTAATTAGCCTTCCCAATTTGGGGTCATCAGATAATAGTAATAACACACATTCAGCAGCACCCACAACAAAGTTTCCACCAAATATTACTGGGTTTGCAGGGTTTCAGAGCTTTGATGAAGGTTCAGGAAAGTCTCTGTTTTTGAACAGGTCCAAGATTTTGAGGCCACTAGAGTCCTTGCCTCCATCTGGGGCTCAGCCAACTCTGTTTCAGAAGAGAGCAGCACTCAGAAAAAACAACATGGGAACAGAACAAGGTGGTGTTGGAATGAGTCAAATTTTGAGCAGGGGAAAAAAATGTGATCTTGTTGGGGATGGGGGTGATAATAAGAGGAAGGCGATGATGATGATGATGATGAGTAGTGGGGATGAGATGGAAGATGCAAGCTTTGATGGGTCTGCATTGAACTATGATTCTGATGACTTAGTTGAGAGTAACAACAACAGTAAGGTGGTGATGGTGGATGAGAACAATGTCAAGAACAATGGTGGGAATAGCTCCAATGGAAACAATAGCACTGTGACTGGGGCAGATCACAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCGGAACGCCGCCGCCGGAAGAAGCTCAATGATAGGCTATACATGCTGAGGTCTGTTGTCCCAAAGATTAGCAAAATGGATAGGGCTTCAATCCTTGGGGATGCAATAGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTTCATAATGAATTGGAGTCTACAACAGGATCAGGTGGCTCTAATTCACTCACACCTGTCTCAAGCTTCCATCCTCTGACACCTACTCCACCTGCACTCCCCAGCCGTATTAAAGAAGAAATGTGTCCCTCTTCATTGCCAAGCCCCAATGGCCAACCTGCCAGGGTTGAGGTTCGGTTGCGCGAAGGAAGGGCTGTGAATATCCACATGTTCTGCGGCCGCAAACCCGGCCTATTGCTCTCAACCATGAGGGCTTTGGACAACCTTGGTTTAGACATTCAGCAAGCTGTTATCAGCTGTTTCAATGGATTTGCCATGGATGTTTTTAGAGCTGAGCAATGCAAGGAAGAACAGGATGTTCATCCAGATCAAATCAAGGCAGTACTCTTGGATACAGCTGGCTACCCTCCAATGATCTAA | 1764 | 0.4615 | MMSWTMDGREEQENSASWNRNSSSSSKPPNMERDEMMMSSLCGFKPMMEIVADDEWYMSNTNTTTTILHNHHQPDMMMMRDMAAFSPTNFGDPSDNSNNLLLHHHPVDSSSSCSPSPSMFTNLGVGADPSASHVHQYFLPPPPPSNPKATTLLLSNNNNNNNPFEIGCEMGFLEPQGSTNSPVLQRGPSPSSSTLLGGLIPDLASKNQLISLPNLGSSDNSNNTHSAAPTTKFPPNITGFAGFQSFDEGSGKSLFLNRSKILRPLESLPPSGAQPTLFQKRAALRKNNMGTEQGGVGMSQILSRGKKCDLVGDGGDNKRKAMMMMMMSSGDEMEDASFDGSALNYDSDDLVESNNNSKVVMVDENNVKNNGGNSSNGNNSTVTGADHKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTTGSGGSNSLTPVSSFHPLTPTPPALPSRIKEEMCPSSLPSPNGQPARVEVRLREGRAVNIHMFCGRKPGLLLSTMRALDNLGLDIQQAVISCFNGFAMDVFRAEQCKEEQDVHPDQIKAVLLDTAGYPPMI* | 588 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 453 | 471 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 214 | 233 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 366 | 399 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 453 | 501 | - | - | |
| Aev08g2454 | 587 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 396 | 457 | IPR036638 | GO:0046983 | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
| Aev08g2454 | 587 | CDD | bHLH_AtAMS_like | 396 | 460 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 176 | 198 | - | - | |
| Aev08g2454 | 587 | Coils | Coil | 432 | 459 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 385 | 399 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 8 | 30 | - | - | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 214 | 234 | - | - | |
| Aev08g2454 | 587 | CDD | ACT_UUR-ACR-like | 516 | 557 | - | - | |
| Aev08g2454 | 587 | PANTHER | BHLH TRANSCRIPTIONAL FACTOR | 125 | 586 | - | - | |
| Aev08g2454 | 587 | SMART | finulus | 399 | 448 | IPR011598 | GO:0046983 | |
| Aev08g2454 | 587 | MobiDBLite | consensus disorder prediction | 366 | 384 | - | - | |
| Aev08g2454 | 587 | Gene3D | - | 387 | 457 | IPR036638 | GO:0046983 | |
| Aev08g2454 | 587 | Pfam | Helix-loop-helix DNA-binding domain | 400 | 442 | IPR011598 | GO:0046983 | |
| Aev08g2454 | 587 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 393 | 442 | IPR011598 | GO:0046983 | |
| Aev08g2454 | 587 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 125 | 586 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev08g2454 | Aev-Chr8 | 23418639 | 23422407 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev08g2454 | 44 | 560 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G26744 | 46.463 | 6.49e-113 | 343 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Aev08g2454 | HLH | 2.3e-09 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev08g2454 | - | - | jre:109003084 | 525.398 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Aev08g2454 | 08 | 23418639 | 23422407 | Aev08g2454 | 08 | 23418639 | 23422407 | ECH | |
| Aev03g3002 | 03 | 29072478 | 29074679 | Aev08g2454 | 08 | 23418639 | 23422407 | PCT |