Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2359 ATGCAAGTACTATTTAAGGTCTGGGGTTGTAAGTTTGGAAAAGCTTGTAAATTTAATCACACAAGAGTAAAGTCTTCAGCAGCAGTCTCTTTCGAGCTTAATTTTCTTGGCCTGCCTATTCGTTTGGGAGAGAAAGAGTGTCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTTAATCATCCTGATCCTACATCTGTTGGAGGAGGAAGTGATTTTCCTTTAGCGTATGGTAATGGCAGTTCTATTTCATCACAAGGTTTATCCCAATCAACTGTACCCTCGTGGTCTTCTCCAAAAACATTAAATGAAACTGCTCACTTTGTGCCAATGATGCTTTCACCTACTCAAGCAGTCTCTCCCCCTAGTTCTGATTGGAATGGATATCAGGCACCTGTATATCAATCTGAGAGAGGAATGCGTCCACCTTCTGCTTATGTCATGAACAACCCAGCAAATCAAAGAAATGTTTATTTGCACAACCAAAAGCAAATGTCAGTCGAAGAGTTTCCAGAAAGGCCCGGTGAACCCGAGTGCAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAACCGGACGGCAAGATTACCTCCGTGCAACCTCAGTGACAAGGGTCTGCCTCTGAGACCGGAACAGAATGTATGCACTCATTACAGCAGGTATGGAATATGCAAATTTGGACCATCTTGTAAGTATGACCACCCAATTCACCCATCACCCTCAACTCTTGATGAACTTGATCAACAAACATCTTACACAAACTCAGCTTCCGTTGAAGCGGCCGAGATGGGTGGGAGTGCAGGTGCTAATGATGCGACAATTCGGCAGCCCGTGTGA 882 0.4354 MQVLFKVWGCKFGKACKFNHTRVKSSAAVSFELNFLGLPIRLGEKECPYYMRTGSCKFGANCKFNHPDPTSVGGGSDFPLAYGNGSSISSQGLSQSTVPSWSSPKTLNETAHFVPMMLSPTQAVSPPSSDWNGYQAPVYQSERGMRPPSAYVMNNPANQRNVYLHNQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRTARLPPCNLSDKGLPLRPEQNVCTHYSRYGICKFGPSCKYDHPIHPSPSTLDELDQQTSYTNSASVEAAEMGGSAGANDATIRQPV* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2359 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 67 IPR000571 GO:0046872
Aev08g2359 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 180 205 IPR000571 GO:0046872
Aev08g2359 293 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 250 IPR000571 GO:0046872
Aev08g2359 293 Gene3D - 223 274 - -
Aev08g2359 293 Gene3D - 5 74 - -
Aev08g2359 293 SUPERFAMILY CCCH zinc finger 222 250 IPR036855 GO:0046872
Aev08g2359 293 SMART c3hfinal6 224 251 IPR000571 GO:0046872
Aev08g2359 293 SMART c3hfinal6 41 68 IPR000571 GO:0046872
Aev08g2359 293 SMART c3hfinal6 178 205 IPR000571 GO:0046872
Aev08g2359 293 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Aev08g2359 293 ProSiteProfiles Zinc finger C3H1-type profile. 178 206 IPR000571 GO:0046872
Aev08g2359 293 SUPERFAMILY CCCH zinc finger 42 68 IPR036855 GO:0046872
Aev08g2359 293 ProSiteProfiles Zinc finger C3H1-type profile. 41 69 IPR000571 GO:0046872
Aev08g2359 293 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 8 293 - -
Aev08g2359 293 Gene3D - 132 213 - -
Aev08g2359 293 PANTHER PROTEIN PHOSPHATASE RELATED 8 293 - -
Aev08g2359 293 SUPERFAMILY CCCH zinc finger 183 207 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2359 Aev-Chr8 22662833 22665437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2359 10 67 C2H2 Transcription Factor Family AT3G02830 44.828 4.26e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev08g2359 zf-CCCH 3.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2359 - - gmx:100786894 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1936 01 24240864 24244494 Aev08g2359 08 22662833 22665437 PCT