Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2356 ATGGCGGAGCCACCAAACGGCGACGTATTCCCGTGGCTGAAGTCGCTGCCGGTGGCGCCGGAGTACCGACCAACGCTGACGGAGTTCCAAGATCCGATCGCGTACATTTTCAAGATCGAGAAGGAGGCTTCTAAGTACGGAATCTGTAAAATCATTCCGCCCTTCCCTCCACCTCCTAAGAAAACCGCAATCGCCAACTTCACCCGCTCACTCGCCGCCCGGCCCCAACAAGGCCCTGATTCCAGGCCAACATTCACCACTCGCCAGCAGCAGATCGGCTTCTGCCCCCGCCGGCCTAGGCCCGTACAGAGGCCCGTCTGGCAGAGCGGTGAGCACTACACCTTCCAGGAATTTGAAGCTAAAGCCAAGTCATTCGAGAGAAGCTACCTCAAAAAGCACCTTCACCGGAAAGGAGGAGCTACCGGTGGAGCCGGTAGCCTCTCCGCGCTCGAAGCTGAGACTCTCTTCTGGAAAGCCACCGTTGATAAGCCGTTCTCGGTTGAGTATGCTAATGACATGCCGGCTCGGCTTTCAGCCGGAAATGCAGGGACGACGGCGGTGGAGGAGATTCCGGGGGTTACTTCGCCGATGGTGTATCTTGCTATGTTGTTTAGCTGGTTCGCTTGGCATGTGGAGGACCATGACTTGCATAGCTTGAATTACCTTCATATGGGAGCTGGCAAGACTTGGTATGGCGTGCCAAGGGATGCTGCTGTGGCGTTCGAGGAGGTGGTTAGGGTTCATGGTTATGGTGGAGAGATAAACCCTCTTGTTACTTTTGCTACCCTTGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTGATTAGCGCAGGTGTTCCTTGCTGCAGGTTAGTTCAAAATGCTGGGGAATTTGTTGTAACATTTCCAAGAGCTTATCACTCAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCTAACATTGCAACACCTGAATGGTTGAGAGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATCAATTACCCTCCCATGGTTTCACATTTTCAGTTACTTTATGACCTTGCCTTAGCTCTGTATAGAATTCCTGAAGGTATCAGTGCTGAACCACGGAGTTCTCGTCTTAAGGATAAGAAGAGGAGTGAAGGGGAAACTGTAATTAAAGAAATATTTGTTCGGGATGTGTTACAGAACAATGATTTACTACATGTACTCAGCAAAGGATCTGCTGTAGTACTTCTTCCTCGTAGATCATTTGACATTTCTTTTTGCTCAAAATTACGTATTGGGTCCCAACAACTAAAAGTGAACCCTGGGTTTTCCCTCGGTGCCGATGGAATAAATTCTTCAAAAAGTTTTGTTTTTGATGATCTGGCATTCCATAGGAACCATGGAGTCAAGAAAGAAAATGGTTTCTATTCAGTAAAAGACAAGTTGACTTCATTGTATGAAAGGAACAGTATTTATTCATTTGATCCTAGAGAACCTGCAGCTAGAAATCTTATGTCAGCTGATTGTAGCTCCTTAAATAACTGGGTTGGTAGTTCAGGACTTTCTGGCAAAAAAGTTCCTGTTTCCCATGAAGATGCAGCTATTCCTGAGCAGAATATGTTTGCAGGCAGGTTTATAAGCTCTATTTATATTCCAT 1633 0.474 MAEPPNGDVFPWLKSLPVAPEYRPTLTEFQDPIAYIFKIEKEASKYGICKIIPPFPPPPKKTAIANFTRSLAARPQQGPDSRPTFTTRQQQIGFCPRRPRPVQRPVWQSGEHYTFQEFEAKAKSFERSYLKKHLHRKGGATGGAGSLSALEAETLFWKATVDKPFSVEYANDMPARLSAGNAGTTAVEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFATLGEKTTVMSPEVLISAGVPCCRLVQNAGEFVVTFPRAYHSGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALYRIPEGISAEPRSSRLKDKKRSEGETVIKEIFVRDVLQNNDLLHVLSKGSAVVLLPRRSFDISFCSKLRIGSQQLKVNPGFSLGADGINSSKSFVFDDLAFHRNHGVKKENGFYSVKDKLTSLYERNSIYSFDPREPAARNLMSADCSSLNNWVGSSGLSGKKVPVSHEDAAIPEQNMFAGRFISSIYIP 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2356 544 Pfam jmjN domain 20 53 IPR003349 -
Aev08g2356 544 ProSiteProfiles JmjN domain profile. 19 60 IPR003349 -
Aev08g2356 544 SUPERFAMILY Clavaminate synthase-like 106 354 - -
Aev08g2356 544 SMART cupin_9 162 333 IPR003347 -
Aev08g2356 544 Gene3D Cupin 5 181 - -
Aev08g2356 544 SMART JmjN_1 18 59 IPR003349 -
Aev08g2356 544 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 187 439 - -
Aev08g2356 544 PANTHER LYSINE-SPECIFIC DEMETHYLASE 187 439 - -
Aev08g2356 544 Pfam JmjC domain, hydroxylase 197 315 IPR003347 -
Aev08g2356 544 Gene3D Cupin 182 337 - -
Aev08g2356 544 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 175 - -
Aev08g2356 544 ProSiteProfiles JmjC domain profile. 162 333 IPR003347 -
Aev08g2356 544 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 7 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2356 Aev-Chr8 22635792 22639867 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2356 173 411 C2H2 Transcription Factor Family AT5G04240 58.704 9.22e-91 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aev08g2356 JmjC 3e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2356 - - gmx:100810972 758.829