Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2348 ATGAGAAGCACTACTTCACTCTTCACTCTGTTTTTCTTTCTCTTCTCTGTTCTCTCCCCTGCCTTCGTTTCCTCTTCCCCTGTTCAAGACCCTGAACTGGTAGTTCTAGAGGTTAACAGGAAAATCAATGAGTCTATTGCTAGAAGGAGTTTAGCTAGTAGGAGGAGCTTGGGGTACCTCTCATGTGGGAGTGGCAACCCAATTGACGATTGTTGGAGGTGTGACCCCAATTGGGAGAACAACAGGCAAAGGCTAGCCGATTGTGCAATTGGGTTCGGCAAGAACGCAATCGGCGGTAGGGACGGCAAGATCTACGTGGTGGATAACTCCGGCGATGATAATCCTGTAAACCCTAAACCCGGAACCCTAAGACATGCAGTGATCCAAGACGAGCCACTGTGGATTATATTCGCTAGGGATATGACGATCACACTAAAAGAAGAACTCATAATGAACTCGTACAAGACAATTGATGGAAGAGGAGCTAGTGTGCACATTTCGGGTGGTCCATGCATAACAATACAATATGTAACAAATGTGATCATACATGGGATTCACATCCATGATTGCAAGCAAGGTGGGAATGCTATGGTGCGTGACTCCCCTAGGCACTACGGGTGGAGGACCGTATCGGACGGCGACGGCGTGTCGATATTCGGTGGGAGCCACATTTGGGTGGACCATTGCTCATTGTCGAATTGCAAGGATGGGTTGATTGATGCAATTCATGGGTCCACGGCTATCACTATATCCAACAATTACATGACACACCATGATAAGGTCATGTTGTTAGGTCATAGCGATTCATACACTCAAGACAAGAACATGCAAGTCACTATTGCTTTTAACCACTTTGGTGAAGGCCTCATTCAAAGAATGCCAAGGTGTAGGCATGGATACTTCCATGTGGTGAATAATGACTACACTCACTGGGAAATGTATGCTATTGGTGGCAGTGCTAATCCCACCATTAACAGCCAAGGCAACAGATTTGTTGCTCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCAGGGGAGGAAGAATGGAAGAGTTGGAATTGGAGATCAGAAGGGGATTTGCTAGTAAAATGGTGCATTTTTCACTGCATCGGGTGCTGGAGCCTCCTCTAG 1143 0.4663 MRSTTSLFTLFFFLFSVLSPAFVSSSPVQDPELVVLEVNRKINESIARRSLASRRSLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKNAIGGRDGKIYVVDNSGDDNPVNPKPGTLRHAVIQDEPLWIIFARDMTITLKEELIMNSYKTIDGRGASVHISGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAGEEEWKSWNWRSEGDLLVKWCIFHCIGCWSLL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 112 137 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 356 380 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 88 105 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 148 164 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 212 233 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Aev08g2348 380 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Aev08g2348 380 SUPERFAMILY Pectin lyase-like 66 372 IPR011050 -
Aev08g2348 380 Gene3D - 65 376 IPR012334 -
Aev08g2348 380 PANTHER PECTATE LYASE 8 371 - -
Aev08g2348 380 SMART amb_all 140 337 IPR002022 -
Aev08g2348 380 Pfam Pectate lyase 149 331 IPR002022 -
Aev08g2348 380 PANTHER PECTATE LYASE 18-RELATED 8 371 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2348 Aev-Chr8 22580225 22583750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2348 1 371 Polysaccharide Lyase AT5G63180 80.593 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2348 K01728 - gmx:100779940 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1942 01 24282139 24284422 Aev08g2348 08 22580225 22583750 PCT