Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2339 ATGTTTTCTATCACCACCATGGCAGAGTCATGCCTCCTCTCTTCAACTTCCTCACTCTTCCACTCCAAACCCATTCCCAAGCACAACCCACTCTTGTCCCAACCCAAACAACACTCCTTCTTCAAGCTCCAACAGCTCTCTTTCCCTTCACTCTCCTTCTCCCTCAACCACCGCCATCATGTGCTCACTCACGTGGCCCAGACCTCCGACTGGGCCCAGCAGGAAGAGGACAACACTCTCACCCTAGAAGAAGCAGAAGAAGCAGACCCTGGGGAAAGTGAAATCGAAGGTGGGCTTTCCGATTGGGAGCCCAACGGTGAACAAGGCCCGGAAGGAGAAGAAGGAGGTGACGGTGAAGGAGAAGGTTTTGTGGAACCTCCTGAGGATGCGAAACTCTTTGTTGGGAACTTGCCTTATGATGTTGATAGCCAGAAATTGGCCATGCTTTTTGAGAAGGCTGGTACTGTTGAGATTGCTGAGGTTATTTATAATAGGGAAACTGACCAGAGTCGCGGGTTTGGATTCGTGACCATGAGCACTGTTGAGGAAGCTGAGAGTGCTGTGGATAAGTTCCACCGCTATGAGTTGGATGGAAGACTGTTGACTGTTAACAAGGCTTCTCCGAGAGGAACTCGGCCTGAGCGCGCACCTCGCACCTTCGAATCTGCATTGAGAGTCTATGTTGGTAACTTGCCATGGGACGTCGATAACACTCGTCTGGAGCAGATTTTCAGCGAACATGGTAAGGTTGTGAATGCCCGGGTAGTCTATGACAGAGAGACTGGACGATCACGTGGCTTTGGTTTTGTCACAATGTCTGATGAGAATGAAATGAATGATGCCATTGCTGCCCTCGATGGTCAGAGTTTGGATGGGAGGGCTATCAGAGTGAATGTTGCTGAAGATAGGCCAAGGCGAAGCTCTTTCTGA 930 0.5032 MFSITTMAESCLLSSTSSLFHSKPIPKHNPLLSQPKQHSFFKLQQLSFPSLSFSLNHRHHVLTHVAQTSDWAQQEEDNTLTLEEAEEADPGESEIEGGLSDWEPNGEQGPEGEEGGDGEGEGFVEPPEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVDKFHRYELDGRLLTVNKASPRGTRPERAPRTFESALRVYVGNLPWDVDNTRLEQIFSEHGKVVNARVVYDRETGRSRGFGFVTMSDENEMNDAIAALDGQSLDGRAIRVNVAEDRPRRSSF* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2339 309 CDD RRM_HP0827_like 131 208 - -
Aev08g2339 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 226 296 IPR000504 GO:0003723
Aev08g2339 309 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 201 IPR000504 GO:0003723
Aev08g2339 309 SMART rrm1_1 131 204 IPR000504 GO:0003723
Aev08g2339 309 SMART rrm1_1 225 298 IPR000504 GO:0003723
Aev08g2339 309 Gene3D - 63 215 IPR012677 -
Aev08g2339 309 SUPERFAMILY RNA-binding domain, RBD 221 307 IPR035979 GO:0003676
Aev08g2339 309 CDD RRM_HP0827_like 225 301 - -
Aev08g2339 309 PANTHER RIBONUCLEOPROTEIN 5 309 - -
Aev08g2339 309 Gene3D - 216 308 IPR012677 -
Aev08g2339 309 MobiDBLite consensus disorder prediction 107 123 - -
Aev08g2339 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Aev08g2339 309 SUPERFAMILY RNA-binding domain, RBD 126 217 IPR035979 GO:0003676
Aev08g2339 309 MobiDBLite consensus disorder prediction 83 127 - -
Aev08g2339 309 PANTHER OS02G0815200 PROTEIN 5 309 - -
Aev08g2339 309 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 224 302 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2339 Aev-Chr8 22516677 22518737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2339 128 306 Eukaryotic Initiation Factors Gene Family AT3G16380 34.555 4.15e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2339 - - ahf:112736327 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g1951 01 24368445 24370678 Aev08g2339 08 22516677 22518737 PCT