Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2280 ATGAACAAAGTTGTTCGGTCTAATCTTAGAGTTAGACTTGGAGATGTTGTCTCTGTTCACCAATGTTCTGATGTTAAGTATGGAAAGAGAGTTCACATCCTTCCAATTGATGATACTATTGAAGGTGTAACTGGCAACTTGTTTGATGCATATCTAAAGCCTTACTTTTTGGAGTCGTATCGACCTGTTAGGAAAGGGGACTTGTTCCTTGTTAGAGGTGGGATGAGGAGTGTTGAATTCAAGGTAATAGAGACTGATCCTGGTGAATACTGTGTTGTGGCACCGGATACCGAAATCTTTTGTGAGGGAGATCCGATCAAACGTGAGGATGAAGAGAGATTGAATGAAGCATCCACAGCTCTTCAAATCGATCGTGTTAAGCCGCCTAAAGGAATCTTGCTGTATGGACCGCCTGGTTCCGGGAAGACCTTGATTGCTAGAGCAGTTGCTAATGAGACAGGTGCATTCTTCTTTCTGATCAACGGACCGGAAATCATGTCCAAGCTGGCCGGTGAGAGTGAGAGTAATCTGAGGAAGGCGTTTGAAGAAGCTGAGAAGAATTCCCCTTCCATTATTTTCATTGATGAATTGGATTCAATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGCATTGTGTCTCAACTTCTGACTCTAATGGATGGCCTCAAGTCTCGGTCGCATGTTATCGTGATCGGTGCGACGAATAGGCCTAATAGCATTGATCCTGCTCTGAGAAGGTTTGGAAGGTTTGATCGTGAGATTGACATTGGCGTTGATCTTGAAAGAGTTGCTAGAGATACTCATGGTTATGTTGGAGCAGATCTTGCAGCACTATGCACAGAGGCAGCACTACAATGTATCAGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCCGAGGTCTTGAATTCCATGTCGGTGACCAACGAACACTTTCAAACTGCTCTGACTTCTTCAAACCCATCCGCCCTGCGCGAAACCGTTGTGGAGGTTCCAAATGTTTCGTGGGACGATATTGGAGGCTTAGAGAATGTCAAAGGGAACTTCAGGAGACTGTTCAATACCCGGTGGAACATCCCGAGAAGTTTGAGAAATTCGGCATGTCGCCTTCCAAAGGCGTTCTGTTCTATGGACCGCCCGGTTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAATGTCAGGCCCAACTTTATAAGTGTTAAGGGACCTGAGTTGCTGACAATGTGGTTTGGTGAAAGTGAGGCTAATGTCCGGGAGATTTTCGATAAGGCCCGGCAATCGGCTCCATGTGTGCTCTTCTTCGACGAACTTGACTCTATTGCAACCCAGCGAGGTAGTTCTGTAGGGGATGCCGGTGGCGCTGCTGATAGGGTGTTGAACCAACTGTTGACAGAAATGGATGGTATGACAGCTAAGAAAACAGTTTTCATCATTGGTGCGACAAACAGACCAGACATTATTGACCCGGCATTGCTCCGGCCTGGACACTTATCAGCTCTTGCTCGTTTCACTCATGGATTTAGTGGTGCAGACATTACTGAAATTTGTCAAAGAGCATGCAAATATGCCATTAGAGAAGATATTGAGAAGGGTATTGAGAAGGAGAGGAAAAAGAAAGAGAACCCTGAGGCCATGGAAGAAGACGACATCGACGAGGTCGCCGAGATTAAGCCGACTCACTTCGAAGAGTCTATGAAGTTTGCTCGCCGGAGTGTCAGCGATGCCGACATCAGGAAATACCAACTCTTTGCTCAGACATTGCAGCAGTCTCGCGGCTTCGGATCGGAGTTTCGGTTTGCCGATCGGACTGACAACACAGCAACTGGAGCCGCAGACCCTTTCTCATCTGCTGGAGGTGAGGGAGATGATGATCTATATGGTTAG 1914 0.4634 MNKVVRSNLRVRLGDVVSVHQCSDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGDPIKREDEERLNEASTALQIDRVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMSVTNEHFQTALTSSNPSALRETVVEVPNVSWDDIGGLENVKGNFRRLFNTRWNIPRSLRNSACRLPKAFCSMDRPVVVKPCLQKQLLMNVRPNFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGHLSALARFTHGFSGADITEICQRACKYAIREDIEKGIEKERKKKENPEAMEEDDIDEVAEIKPTHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTDNTATGAADPFSSAGGEGDDDLYG* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2280 637 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 1 117 - -
Aev08g2280 637 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 507 612 - -
Aev08g2280 637 MobiDBLite consensus disorder prediction 614 637 - -
Aev08g2280 637 PANTHER AAA-FAMILY ATPASE 1 117 - -
Aev08g2280 637 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 126 262 - -
Aev08g2280 637 PANTHER CELL DIVISION CYCLE PROTEIN 48 HOMOLOG 262 509 - -
Aev08g2280 637 ProSitePatterns AAA-protein family signature. 485 503 IPR003960 GO:0005524|GO:0016887
Aev08g2280 637 Gene3D - 1 24 - -
Aev08g2280 637 ProSitePatterns AAA-protein family signature. 232 250 IPR003960 GO:0005524|GO:0016887
Aev08g2280 637 SMART CDC48_2_2 42 108 IPR004201 -
Aev08g2280 637 CDD AAA 398 513 - -
Aev08g2280 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 330 IPR027417 -
Aev08g2280 637 PANTHER AAA-FAMILY ATPASE 126 262 - -
Aev08g2280 637 PANTHER AAA-FAMILY ATPASE 507 612 - -
Aev08g2280 637 PANTHER AAA-FAMILY ATPASE 262 509 - -
Aev08g2280 637 Pfam Cell division protein 48 (CDC48), domain 2 44 106 IPR004201 -
Aev08g2280 637 Gene3D - 506 594 - -
Aev08g2280 637 SUPERFAMILY Cdc48 domain 2-like 24 116 IPR029067 -
Aev08g2280 637 Pfam AAA+ lid domain 262 303 IPR041569 -
Aev08g2280 637 Pfam AAA+ lid domain 507 545 IPR041569 -
Aev08g2280 637 Gene3D - 254 334 - -
Aev08g2280 637 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 595 IPR027417 -
Aev08g2280 637 Gene3D - 339 503 IPR027417 -
Aev08g2280 637 SMART AAA_5 391 517 IPR003593 -
Aev08g2280 637 SMART AAA_5 128 264 IPR003593 -
Aev08g2280 637 Gene3D - 25 108 - -
Aev08g2280 637 Pfam ATPase family associated with various cellular activities (AAA) 397 508 IPR003959 GO:0005524|GO:0016887
Aev08g2280 637 Pfam ATPase family associated with various cellular activities (AAA) 132 261 IPR003959 GO:0005524|GO:0016887
Aev08g2280 637 CDD AAA 112 261 - -
Aev08g2280 637 Gene3D - 109 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2280 Aev-Chr8 22017503 22021254 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2280 406 540 Calmodulin-binding Proteins AT3G56690 34.503 1.90e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2280 K13525 - dct:110095672 986.097