Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2279 ATGGGTATCAGCATAAAGGGTCAAATTGAGAAGGTGAATGGGAAGGAATTGAGTTACACAGAGTTTGTGCAGAGATTCATGGAAAACAACCAACCTGTGGTGCTCACTGGACTCATGGACCTCTATTGGAGGGCTTCCTCTGATTGGGTCACCCCTCATGGCCATCCTAACTTTCATTTTTTCTCTACCCATTTTGGGGCTTCCAAAGTTCAGGTTGCAGATTGTGACACCAGAGAGTTCACTGATCAGAAGAGAGAGGAGATGCTGGTCTCAGATTTCATAAGAAGGTGCCTTCAAGTTGGGGGTTCTGCAGTTCAGGGTAGTAATGAGAATCATGAAAGTAATGGTCACACTCACTCTGTACCGTATTTGAAAGATTGGCATTTTGTTAAGGAGTATCCAGAATATGTAGCTTATATCACTCCAATGTTCTTTTGTGATGATTGGCTTAACCTGTATCTTGACAATTTCAGAATGCGTACTAATTCTGACACAAACCAACAAAATGAGGAAATATGTTGCTCTGACTATCGTTTCGTATACATGGGGGTTAAAGGATCTTGGACACCTCTTCATGCTGATGTTTTCAGGTCATATAGCTGGTCGGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTATCATCTTATATTTGACAGGAATATGAAAAGCTGTGTCTATAATATCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTTGAAAAGGCTATCTGGTTAGAATGCACACAAGAAACAGGTGAAATTATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAACTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAAATTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAAGGTCTCTGCCAGCGCAATCTTGCCGCTAACACAGGAATGAATTTTCATGACTTCTTTACTTTCATATCATACTTCACCTTGGCCAACTTGGTCTTGCTTTGCCATATAAATGGAAGATATGGAAGTTCATCTGCAATAGCTCAGCATTTATCAATGAATCTTGGATCTATAAGGGCAATTGCATCAGAGATGAAACAAATGCATGCTCTGGAAGGAAATAATGATTGTATTGTGGATATGATCAAAACATTTGAAGATCCTAGATTTTCCAAGTTGTGCATGAATGTAGGAAGAACATATGCAATGATACATGACCAATCTTATATGTCCTCTGATTTTGAAAGAGCTTCAATGGGCGGCTTAGTGGACCTCAAAGCACACATCTCATATCAGTTATACACACCTGAAGATCTCATTAGTTTTATAGACAATGCTGTTACAGAACTTGGTGACTGA 1416 0.3912 MGISIKGQIEKVNGKELSYTEFVQRFMENNQPVVLTGLMDLYWRASSDWVTPHGHPNFHFFSTHFGASKVQVADCDTREFTDQKREEMLVSDFIRRCLQVGGSAVQGSNENHESNGHTHSVPYLKDWHFVKEYPEYVAYITPMFFCDDWLNLYLDNFRMRTNSDTNQQNEEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQYHLIFDRNMKSCVYNIFDEVSDSKFPGFEKAIWLECTQETGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWKLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLAANTGMNFHDFFTFISYFTLANLVLLCHINGRYGSSSAIAQHLSMNLGSIRAIASEMKQMHALEGNNDCIVDMIKTFEDPRFSKLCMNVGRTYAMIHDQSYMSSDFERASMGGLVDLKAHISYQLYTPEDLISFIDNAVTELGD* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2279 471 Pfam Cupin-like domain 21 285 IPR041667 -
Aev08g2279 471 Gene3D Cupin 3 287 - -
Aev08g2279 471 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 468 - -
Aev08g2279 471 SUPERFAMILY Clavaminate synthase-like 7 314 - -
Aev08g2279 471 ProSiteProfiles JmjC domain profile. 122 302 IPR003347 -
Aev08g2279 471 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 468 - -
Aev08g2279 471 SMART cupin_9 144 302 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2279 Aev-Chr8 22011127 22014633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2279 7 294 Glycosyltransferase AT1G78280 23.490 3.09e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Aev08g2279 Cupin_8 3.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2279 - - gsj:114409851 804.283