Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2220 ATGATGATGGCATCATTTGGAGGCACAAGCCAGAAATGCAAAGCATGTGAGAAGACAGTGTACTTGGTGGATCAACTCACAGCTGACAATAAGGTCTATCACAAGTCCTGCTTCAGATGTCACCACTGTAAGAGCACCCTCAAGTTAAGTAATTATTGTTCTTTTGAGGGAGTTTTATACTGTAAGCCTCACTTTGATCAACTCTTTAAGATGACTGGAAGCTTGGACAAAAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTTCTGATCAGGTGCAAACCAATAGCAGAGTTTCAAGTTTATTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACAGTATACCCTATTGAAAAGGTAGCAGTTGATGGAGCATGTTACCATAAGGCTTGTTTCAGGTGCACACATGGAGGATGTGTAATTAGCCCCTCAAATTATGTGGCGCACGAACACCGGCTTTATTGCCGGCACCACCATACTCAGCTCTTCAAGCAGAAAGGAAACTTCAGCAAACTTGACATGCAAGAAAATGAAGTTTCAGGGCTGATTCATGAGACCACCACAACAGAACAAGACCAGTAA 597 0.4188 MMMASFGGTSQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKSTLKLSNYCSFEGVLYCKPHFDQLFKMTGSLDKSFEGIPRTARLERSSDQVQTNSRVSSLFAGTQEKCVACKKTVYPIEKVAVDGACYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSKLDMQENEVSGLIHETTTTEQDQ* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2220 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 39 79 - -
Aev08g2220 198 ProSiteProfiles LIM domain profile. 110 170 IPR001781 -
Aev08g2220 198 CDD LIM1_SF3 9 70 - -
Aev08g2220 198 ProSiteProfiles LIM domain profile. 11 71 IPR001781 -
Aev08g2220 198 SMART lim_4 111 163 IPR001781 -
Aev08g2220 198 SMART lim_4 12 64 IPR001781 -
Aev08g2220 198 CDD LIM2_SF3 112 172 - -
Aev08g2220 198 Gene3D Cysteine Rich Protein 106 176 - -
Aev08g2220 198 Gene3D Cysteine Rich Protein 8 77 - -
Aev08g2220 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 38 - -
Aev08g2220 198 Pfam LIM domain 112 167 IPR001781 -
Aev08g2220 198 Pfam LIM domain 13 67 IPR001781 -
Aev08g2220 198 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 192 - -
Aev08g2220 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 104 137 - -
Aev08g2220 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 176 - -
Aev08g2220 198 ProSitePatterns LIM zinc-binding domain signature. 13 47 IPR001781 -
Aev08g2220 198 PANTHER OS06G0237300 PROTEIN 3 192 IPR045268 GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2220 Aev-Chr8 21373381 21375866 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aev08g2220 LIM 1.8e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2220 K09377 - gmx:100500501 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev01g2046 01 25074195 25076194 Aev08g2220 08 21373381 21375866 PCT