LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g2209	ATGAATGTAATTGATCAGTGTTGGAGATGGAATCCTGAATGGAGGAGGCATAGATCACAACTTGCCAATTGCTCTGTGGGCTATGTTGGCAAGATGATGAACAACTTAGGCAATGATCTCATTTATTATAAGGTTACGGATCCTACTGATGACCCAATAAATCCTAAACCTGGAAGTTTGAGGTATGGAGCTTCAGTGATTCAAGGAAAAGTTTGGATCAAATTTCAGAGGGATATGCATATTACACTTGTGAAGCCCCTTCTTGTTAGTAGTTTCACCACCATTGATGGTCGTGGTGTCAACATTCATATTGCTAATAATGCTTGCTTGATGATCTTTAAGGCTACAAACATAATCATCCATAGCATTCGAGTTCATCATTGTAAAGCTCAAGCCCCTGGATTGGTGATGGGTCCTAATGGAAAGGTAATTTCTTTGGGTCAAGTGGATGGAGATGCAATCAGACTTATTACAGCTTCAAAGATTTGGATTGATCATAATACTCTTCATGATTGTGAAGATGGTCTTCTTGATGTCACTCGTGGTTCTACTGATGTCACTGTCTCTAATAATTGGTTCAGAAATCAAAATAAGGTTATGCTTCTTGGCCATGATGATGGATATGTGAGAGACCAAAACATGAAAGTTACTGTTGTGTACAATCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTTGCCAACAATCTTTATCAAGGATGGGTGCAATATGCCATCGGTGGAAGCATGGAACCCAGCCTTAAAAGTGAAGCTAATCTCTTCATAGCACCAACATCCGGGAGCAAGGAGACGACCCTTTTGGTGATCCTAAGACCACTGGGGACCCTTATTGCACTCTCTTCGTGTGTCGCCTCTCTCGCCTAG	909	0.4147	MNVIDQCWRWNPEWRRHRSQLANCSVGYVGKMMNNLGNDLIYYKVTDPTDDPINPKPGSLRYGASVIQGKVWIKFQRDMHITLVKPLLVSSFTTIDGRGVNIHIANNACLMIFKATNIIIHSIRVHHCKAQAPGLVMGPNGKVISLGQVDGDAIRLITASKIWIDHNTLHDCEDGLLDVTRGSTDVTVSNNWFRNQNKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKETTLLVILRPLGTLIALSSCVASLA*	303

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g2209	302	SMART	amb_all	78	275	IPR002022	-
	Aev08g2209	302	Pfam	Pectate lyase	89	269	IPR002022	-
	Aev08g2209	302	Gene3D	-	1	283	IPR012334	-
	Aev08g2209	302	PANTHER	PECTATE LYASE	1	281	-	-
	Aev08g2209	302	PANTHER	PECTATE LYASE 18-RELATED	1	281	IPR045032	GO:0030570
	Aev08g2209	302	SUPERFAMILY	Pectin lyase-like	42	275	IPR011050	-
	Aev08g2209	302	PRINTS	Pollen allergen Amb family signature	252	271	IPR018082	-
	Aev08g2209	302	PRINTS	Pollen allergen Amb family signature	230	249	IPR018082	-
	Aev08g2209	302	PRINTS	Pollen allergen Amb family signature	24	41	IPR018082	-
	Aev08g2209	302	PRINTS	Pollen allergen Amb family signature	150	171	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev08g2209	Aev-Chr8	21296494	21301310	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev08g2209	32	278	Polysaccharide Lyase	AT5G09280	70.445	2.38e-142	401

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev08g2209	K01728		-	gmx:100780437	517.694

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