Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2209 ATGAATGTAATTGATCAGTGTTGGAGATGGAATCCTGAATGGAGGAGGCATAGATCACAACTTGCCAATTGCTCTGTGGGCTATGTTGGCAAGATGATGAACAACTTAGGCAATGATCTCATTTATTATAAGGTTACGGATCCTACTGATGACCCAATAAATCCTAAACCTGGAAGTTTGAGGTATGGAGCTTCAGTGATTCAAGGAAAAGTTTGGATCAAATTTCAGAGGGATATGCATATTACACTTGTGAAGCCCCTTCTTGTTAGTAGTTTCACCACCATTGATGGTCGTGGTGTCAACATTCATATTGCTAATAATGCTTGCTTGATGATCTTTAAGGCTACAAACATAATCATCCATAGCATTCGAGTTCATCATTGTAAAGCTCAAGCCCCTGGATTGGTGATGGGTCCTAATGGAAAGGTAATTTCTTTGGGTCAAGTGGATGGAGATGCAATCAGACTTATTACAGCTTCAAAGATTTGGATTGATCATAATACTCTTCATGATTGTGAAGATGGTCTTCTTGATGTCACTCGTGGTTCTACTGATGTCACTGTCTCTAATAATTGGTTCAGAAATCAAAATAAGGTTATGCTTCTTGGCCATGATGATGGATATGTGAGAGACCAAAACATGAAAGTTACTGTTGTGTACAATCATTTTGGACCTAATTGCAACCAACGCATGCCAAGGATTCGCCATGGATATGCACATGTTGCCAACAATCTTTATCAAGGATGGGTGCAATATGCCATCGGTGGAAGCATGGAACCCAGCCTTAAAAGTGAAGCTAATCTCTTCATAGCACCAACATCCGGGAGCAAGGAGACGACCCTTTTGGTGATCCTAAGACCACTGGGGACCCTTATTGCACTCTCTTCGTGTGTCGCCTCTCTCGCCTAG 909 0.4147 MNVIDQCWRWNPEWRRHRSQLANCSVGYVGKMMNNLGNDLIYYKVTDPTDDPINPKPGSLRYGASVIQGKVWIKFQRDMHITLVKPLLVSSFTTIDGRGVNIHIANNACLMIFKATNIIIHSIRVHHCKAQAPGLVMGPNGKVISLGQVDGDAIRLITASKIWIDHNTLHDCEDGLLDVTRGSTDVTVSNNWFRNQNKVMLLGHDDGYVRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMEPSLKSEANLFIAPTSGSKETTLLVILRPLGTLIALSSCVASLA* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2209 302 SMART amb_all 78 275 IPR002022 -
Aev08g2209 302 Pfam Pectate lyase 89 269 IPR002022 -
Aev08g2209 302 Gene3D - 1 283 IPR012334 -
Aev08g2209 302 PANTHER PECTATE LYASE 1 281 - -
Aev08g2209 302 PANTHER PECTATE LYASE 18-RELATED 1 281 IPR045032 GO:0030570
Aev08g2209 302 SUPERFAMILY Pectin lyase-like 42 275 IPR011050 -
Aev08g2209 302 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Aev08g2209 302 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Aev08g2209 302 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Aev08g2209 302 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Aev08g2209 302 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2209 Aev-Chr8 21296494 21301310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2209 32 278 Polysaccharide Lyase AT5G09280 70.445 2.38e-142 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2209 K01728 - gmx:100780437 517.694