Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g2162 ATGGGGGATGTCGCAGTCATGAGAGAGATTGAGGCCACCGCCTCTCGCCTCGGATTGGATCTCTCCACCATCGATCTCGACCCTATTCGCCTCCCTCCCGATGACGACTTTGGCATCAAAAGTGATGATGAAGAAGTTCTCCAAGAGGAGAATCTGGAGTTTGATACAGGGTTTGGCAACATTATAGTGGTTGATAATCTCCCTGTTGTTCCAAAGGAGAAGTTTGAGAAGCTTGAAGGCGTCATTAGAAAAATCTACAGCCAGATTGGTCTCATCAAGGACGATGGTCTCTGGATGCCCGTTGATCCACAAACTGAAAAGACTTTGGGTTATTGCTTTATTGAGTATAATACACCTCAGGAAGCTGAGCTTGCCAAAGAGAAGACACACGGATACAAGTTGGATCGCTCACACATTTTTGCTGTGAATATGTTCGATGACTTTGATAAGTTCATGAGAGTTCCAGATGAGTGGGCTCCACCTGAATCTACACCATACACACCTGGGGAAAATCTTCAACATTGGTTGACTGATGCAAAAGCCCGTGACCAATTTGTCATTCGTTCTGGCTCTGATACTGAGGTGTTGTGGAATGATGCAAGGCATTTGAAGCCTGATCCAGTTTATAAGCGTGCATTTTGGACTGAAAGTTTTGTGCAATGGTCCCCAATGGGCACATACCTGGCAACTATACATAGGCAAGGAGCAGCAGTTTGGGGAGGAGCCTCAGCATTCAACCGCCTCATGCGATATGCTCATCCCCAGGTTAAACTTATTGATTTTTCACCTGGTGAGAAGTATTTGGTGACCTATAGTAGCCATGAACCGAGCAATCCTCGAGATGCAAATAGGGTTGTGATAAATATTTTCGATGTGAGAACTGGAAAAGTGATGAGAGATTTTAAGGGAAGTGCTGATGATTTTGCCATTGGAGGTGCTGGTGGTGTCACAGGAGTGTCATGGCCCATTTTCAGATGGGGTGGTGGAAAGGATGACAAGTACTTCGCTAGACTTGGGAAAAATATGATCTCTGTCTATGAGACAGATACATTCTCTCTCGTTGACAAGAAGTCCTTAAAGGTTGAAAGTGTAATGGATTTCAGCTGGTCACCAACTGATCCAATCCTTGCACTTTTTGTTCCCGAGTTGGGTGGTGGGAACCAGCCTGCTAGGGTGAGTCTGATTCAAATCCCCAGCAAAGAGGAGCTCAGGCAGAAGAATCTATTCAGTGTAAGTGATTGTAAGATGTACTGGCAAAGCAATGGAGAGTACCTTGCTGTTAAGGTTGATCGTTATACAAAAACCAAGAAAAGCACTTACACAGGTTTTGAGCTTTTCCGTATAAAAGAGCGAGACATACCTATTGAAGTGTTGGAGCTTGAGAATAAAAATGATAAGATCATTGCGTTTGCCTGGGAGCCAAAGGGCCATAGGTTTGCCATAATTCATGGTGATAACCCAAGGCCTGATGTCAGTTTTTACTCAATGAAGACTGCCCAAAATACTGGTCGTGTTTCAAAGCTCATTACGCTCAAGGGCAAACAGGCAAATGCCCTTTTCTGGTCTCCTGCTGGCCGCTTCATAATACTTGCAGGATTGAAAGGCTTGAATGGACAGCTTGAATTTTACAACGTGGATGAGCTTGAAACTATGGCAACCGCTGAGCATTTTATGGCAACAGATATTGAGTGGGATCCTACTGGAAGGTATGTTGCAACCTCTGTGACTTCAGTTCATGAAATGGAAAATGGGTTCAATATATGGTCTTTCCATGGAAAGCTTCTTTATCGTATCCTGAAGGACCACTTCTTCCAGTACTTGTGGCGGCCAAGGCCACCAACTCTCTTGAGCCCTGAGAAGGAGGAAGAGATATCTAAGAACCTGAAGAAGTACAGCAAGAAGTACGAGGCAGAGGACCAAGACGTGTCTATGCTGTTGAGCGAGCAGGAGAGAGAGAAGAGGAAGGCGCTGAAGGATGAATGGGAGAGATGGGTGAGCGAATGGAAGAGGATGCACGAAGAAGAGAAGCTAGAGAGACAAAAGCTGAGAGATGGTGAAGCCAGTGATGATGAGGAAGAGGAGTACGAGGCGAAGGAAGTCGAAATCGAAGAAGTCATCGATGTCAAGGAGGAAGTTGTTCCCTTGGACTAG 2151 0.4528 MGDVAVMREIEATASRLGLDLSTIDLDPIRLPPDDDFGIKSDDEEVLQEENLEFDTGFGNIIVVDNLPVVPKEKFEKLEGVIRKIYSQIGLIKDDGLWMPVDPQTEKTLGYCFIEYNTPQEAELAKEKTHGYKLDRSHIFAVNMFDDFDKFMRVPDEWAPPESTPYTPGENLQHWLTDAKARDQFVIRSGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLATIHRQGAAVWGGASAFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGAGGVTGVSWPIFRWGGGKDDKYFARLGKNMISVYETDTFSLVDKKSLKVESVMDFSWSPTDPILALFVPELGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGEYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFAIIHGDNPRPDVSFYSMKTAQNTGRVSKLITLKGKQANALFWSPAGRFIILAGLKGLNGQLEFYNVDELETMATAEHFMATDIEWDPTGRYVATSVTSVHEMENGFNIWSFHGKLLYRILKDHFFQYLWRPRPPTLLSPEKEEEISKNLKKYSKKYEAEDQDVSMLLSEQEREKRKALKDEWERWVSEWKRMHEEEKLERQKLRDGEASDDEEEEYEAKEVEIEEVIDVKEEVVPLD* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g2162 716 SUPERFAMILY DPP6 N-terminal domain-like 218 602 - -
Aev08g2162 716 CDD RRM_eIF3B 59 143 IPR034363 -
Aev08g2162 716 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 48 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aev08g2162 716 MobiDBLite consensus disorder prediction 674 699 - -
Aev08g2162 716 SMART rrm1_1 61 143 IPR000504 GO:0003723
Aev08g2162 716 PIRSF Transl_init_eIF3b 6 715 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aev08g2162 716 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Aev08g2162 716 Gene3D - 55 154 IPR012677 -
Aev08g2162 716 Gene3D - 187 382 IPR015943 GO:0005515
Aev08g2162 716 Gene3D - 418 617 IPR015943 GO:0005515
Aev08g2162 716 Pfam Eukaryotic translation initiation factor eIF2A 406 605 IPR013979 -
Aev08g2162 716 PANTHER BNACNNG51870D PROTEIN 8 714 - -
Aev08g2162 716 Coils Coil 688 708 - -
Aev08g2162 716 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
Aev08g2162 716 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 8 714 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aev08g2162 716 SUPERFAMILY RNA-binding domain, RBD 58 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g2162 Aev-Chr8 20829695 20834557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g2162 9 713 Eukaryotic Initiation Factors Gene Family AT5G27640 78.723 0.0 1196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g2162 K03253 - zju:107419937 1295.03