Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1979 ATGAATCCAATAATGGAAGAAGATCAAGATCAAGAACAGAACAAGAAGAAGAAGAAGCAACACGTGTGCAAGTTCTGTAGCAAGAGCTTCCCTTGTGGAAGATCATTGGGGGGTCACGTGAGGTCTCACGTGATCAATGCAGAAACAGATCACCATGAGAAGCTTCTTCTTGCAGCTTCTGCAGATTCTGAAGCTGGTTATTATGGTCTCATAGAGAATCCAAAGAAGACATGGAGGCTCAATTCAAGTGAAGAAGAAGAAGAAGAAGACACTTTGTTCTTGGACAAGTTTTGCAGAGAGTGTGGTAAAGGATTCCCATCTTGGAAATCACTTTTTGGTCACATGAAGTGCCATTCTGAGAAAGAAAGATCAGTTTCCAATAACAACAACAATAATACTACTAATAGCTTTTTTGATGATCAAGTTCAAGATTCATCATGGAATACTAACACCAATTATGATGATGATGATGATTCTTGGCAGAAGCTTCTTTTTGATAGCCAATCTGATAATGAAGCCACCAAAACTGCTCCAAATAGAAGGAAGAGATCCAAGAGGGTTAGAACAAGGTACATGGTAGCATCAACTAATTCTTCTAATGTTTCTGAGATTGAGCAAGATGAGGTTGTTGCGATGAGCTTGATTATGCTTAGCAGAGATGTTGGGAATTGGGGTGGCATCAATTCTGTTCCTGACAACAACAACAGCAATTTGTTGAACTTTGATGGTCCATCTTCAGTTAGTGAGGGGAAGGGGAAGAAGAATAAGGTTCTTGTCACAAATGGTTCTGATTTTGCAGCAAAATTGACCAAATCAAAAGGGGAAAAAGGTTCAGAAATTTTGTCTGCTAGTACTAATCATAATAAGTACACTTCAATAAAGGCAAAGTTTCTGGATTCAGAAGGTGAATTCAGCAAGATCTGTTTTCAGAACAAGAGAGGGAAGTTTGAGTGCACAACTTGCAACAAAATCTTCCATTCATATCAAGCTCTTGGTGGTCACAGAGCAAGCCACAAGAAGATAAAAGGGTGTTTTGCTTCAAGGAACTATGAAGAACCAGACTCTTCCTCCATTATTACTGACCCAACAACAACAACAGCAGAAACCAGCAACAACAAGCACATCATGAAGAAGAGTGACAACAACAACAATGAATTATATCACTTGGAACAAGAACAACATCATGAAGAAGAAGAAGAAGTTGCTGTTGAGACAGAGTCCAAGAACAAGGGAAAAGGGTTTCATGAGTGCCCAATTTGCCTTAAAGTTTTCACATCTGGACAGGCATTAGGTGGACACAAGAGATCACATATGTCTAACAATGGTGGGTCTATTGAGGCTGGTAAAAAATGTCAAAGTCAAAGAGTTGTACTTCATGAATCAGTTCCAGAAATTAGAGATTTTCTTGATCTCAATCTTCCTGCTGAGGAAGAAATCAGCAACAATAGTAGCCATGTTGATGTGAATTACAGGCCTTGGTGGGTAGTAGGAGGAGGAAATCTCAAGCAGGAGGCAGTGCTAGGCCTCATTTCTAACTAA 1539 0.3957 MNPIMEEDQDQEQNKKKKKQHVCKFCSKSFPCGRSLGGHVRSHVINAETDHHEKLLLAASADSEAGYYGLIENPKKTWRLNSSEEEEEEDTLFLDKFCRECGKGFPSWKSLFGHMKCHSEKERSVSNNNNNNTTNSFFDDQVQDSSWNTNTNYDDDDDSWQKLLFDSQSDNEATKTAPNRRKRSKRVRTRYMVASTNSSNVSEIEQDEVVAMSLIMLSRDVGNWGGINSVPDNNNSNLLNFDGPSSVSEGKGKKNKVLVTNGSDFAAKLTKSKGEKGSEILSASTNHNKYTSIKAKFLDSEGEFSKICFQNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNYEEPDSSSIITDPTTTTAETSNNKHIMKKSDNNNNELYHLEQEQHHEEEEEVAVETESKNKGKGFHECPICLKVFTSGQALGGHKRSHMSNNGGSIEAGKKCQSQRVVLHESVPEIRDFLDLNLPAEEEISNNSSHVDVNYRPWWVVGGGNLKQEAVLGLISN* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1979 512 MobiDBLite consensus disorder prediction 166 188 - -
Aev08g1979 512 Gene3D Classic Zinc Finger 3 122 - -
Aev08g1979 512 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 12 512 - -
Aev08g1979 512 ProSitePatterns Zinc finger C2H2 type domain signature. 318 338 IPR013087 -
Aev08g1979 512 ProSitePatterns Zinc finger C2H2 type domain signature. 417 437 IPR013087 -
Aev08g1979 512 MobiDBLite consensus disorder prediction 121 153 - -
Aev08g1979 512 MobiDBLite consensus disorder prediction 124 153 - -
Aev08g1979 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 415 442 IPR013087 -
Aev08g1979 512 Pfam C2H2-type zinc finger 316 340 - -
Aev08g1979 512 Pfam C2H2-type zinc finger 415 439 - -
Aev08g1979 512 Pfam C2H2-type zinc finger 21 43 - -
Aev08g1979 512 Pfam C2H2-type zinc finger 98 120 - -
Aev08g1979 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 343 IPR013087 -
Aev08g1979 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Aev08g1979 512 ProSitePatterns Zinc finger C2H2 type domain signature. 23 43 IPR013087 -
Aev08g1979 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 21 43 IPR013087 -
Aev08g1979 512 SUPERFAMILY beta-beta-alpha zinc fingers 17 44 IPR036236 -
Aev08g1979 512 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Aev08g1979 512 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 12 512 - -
Aev08g1979 512 SMART c2h2final6 415 437 IPR013087 -
Aev08g1979 512 SMART c2h2final6 96 118 IPR013087 -
Aev08g1979 512 SMART c2h2final6 316 338 IPR013087 -
Aev08g1979 512 SMART c2h2final6 21 43 IPR013087 -
Aev08g1979 512 SUPERFAMILY beta-beta-alpha zinc fingers 97 338 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1979 Aev-Chr8 18028461 18029999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1979 407 475 C2H2 Transcription Factor Family AT1G26610 50.704 1.75e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev08g1979 zf-C2H2_6 4.1e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1979 - - aprc:113852386 429.869