Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1953 ATGGCTTCATCTTCCTCCATGTCACTCAGGCGAAGAAGGACCCACGCACCCAAACCCACTCCTCCGCCCATGTTCTTGTCCCTCGACGACGGCGACGAAGATGACGTCAGCTGCGAGCGATGTGGCTCCGGTGACTCCCCCGCCGAGCTGCTCCTGTGCGACAGGTGCGACCGAGGGTACCATATTTTCTGCCTCCGACCTATCCTTCCTTCAGTCCCCAAGGCATCTTGGATCTGCCCCGCTTGCTCCGACAAGAACAATATAAAGCCTAAGTCTTTTCCTCTAGTTCAGACCAAAATCATTGACTTTTTCCGAATTAAACGGTCTTCCGAGGAACCTCTACTATCATGTCAAGAGGTGAGGAGAAAGCGGAAGCGGGGGAGCAGTTTGGTGGTGTCGAAGAAGAAGAGGAAACTGCTGCCGTTCACTCCCATTGAAGATCCTAAGAGGAGACTAGAACAGATGGCATCACTTGCGACAGCGCTGATGGCAACCAAATCGGAGTTCAGCAATGAGCTTACTTACATGCCTGGAATGGCACCAAGGTCTGCTAATTGTCCTGCGTTGGAGCATGGTGGAATGCAGGTCTTATCAAAAGAAGATACAGAGACATTAAACTTGTGCAGAACTATGATGGGAAGAGGAGAATGCCCTCCTCTCATGGTTGTTTTTGATCCTCTAGAAGGTTTCACTGTTGAGGCCGATAGATGCATAAAAGATTTGACAATTATCACAGAATATGTTGGAGATGTAGACTTTTTACAGAATCGGGAACATGATGATGGAGATAGTATTATGACACTTCTTTCAGCTTCTGATCCTTCCAAAACGCTTGTCATCTGTCCAGATAAACGTAGCAACATAGCACGTTTCATTAATGGGATCAATAACCACACACCGGAAGGCAAAAAGAAGCAGAACTTGAAGTGCGTGAGATTTGACGTGAATGGTGAATGTCGGGTTCTCTTAATTGCTAATAGAGATATAACAAAAGGAGAAAGATTGTACTATGACTACAATGGATTAGAGCATGAATATCCAACTGAACATTTTGTCTAA 1059 0.4627 MASSSSMSLRRRRTHAPKPTPPPMFLSLDDGDEDDVSCERCGSGDSPAELLLCDRCDRGYHIFCLRPILPSVPKASWICPACSDKNNIKPKSFPLVQTKIIDFFRIKRSSEEPLLSCQEVRRKRKRGSSLVVSKKKRKLLPFTPIEDPKRRLEQMASLATALMATKSEFSNELTYMPGMAPRSANCPALEHGGMQVLSKEDTETLNLCRTMMGRGECPPLMVVFDPLEGFTVEADRCIKDLTIITEYVGDVDFLQNREHDDGDSIMTLLSASDPSKTLVICPDKRSNIARFINGINNHTPEGKKKQNLKCVRFDVNGECRVLLIANRDITKGERLYYDYNGLEHEYPTEHFV* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1953 352 ProSiteProfiles Zinc finger PHD-type profile. 35 85 IPR019787 -
Aev08g1953 352 SUPERFAMILY SET domain 201 340 IPR046341 -
Aev08g1953 352 SUPERFAMILY FYVE/PHD zinc finger 29 89 IPR011011 -
Aev08g1953 352 ProSitePatterns Zinc finger PHD-type signature. 38 82 IPR019786 -
Aev08g1953 352 ProSiteProfiles SET domain profile. 218 340 IPR001214 GO:0005515
Aev08g1953 352 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 8 349 - -
Aev08g1953 352 Pfam PHD-finger 38 84 IPR019787 -
Aev08g1953 352 CDD SET_ATXR5_6-like 215 352 - -
Aev08g1953 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 100 IPR013083 -
Aev08g1953 352 CDD PHD_RSF1 38 82 - -
Aev08g1953 352 PANTHER HISTONE ACETYLTRANSFERASE 8 349 - -
Aev08g1953 352 SMART PHD_3 37 83 IPR001965 -
Aev08g1953 352 Gene3D SET domain 124 352 IPR046341 -
Aev08g1953 352 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1953 Aev-Chr8 17703125 17706213 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1953 34 126 C2H2 Transcription Factor Family AT3G01460 33.333 7.36e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev08g1953 PHD 3.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1953 K24406 - gmx:100775247 548.895