Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1896 ATGGAAAACTTTTCAACAGTTTCAGTCTTGTGTAAGGAAGAGGATCAATTGGATTTGCCACCAGGATTCAGGTTTCACCCAACAGATGAAGAGCTTATAAGTCATTACCTTTACATGAAAGTCACTAACACAAGCTTCTCTGCAAGAGCCATTGGAGAGGTGGACCTGAATAGGTCTGAGCCTTGGGATTTGCCATGGAAAGCCAAAATGGGTGAAAAGGAATGGTACTTTTTCTGTGTTAGGGACAGAAAATACCCAACTGGGTTGAGGACTAATAGAGCAACTGAATCAGGGTATTGGAAAGCCACAGGGAAAGATAAGGAGATATACAGAGGAAAATCACTGGTTGGAATGAAGAAAACACTTGTTTTCTACAAAGGAAGAGCACCAAAAGGAGAGAAAAGTGATTGGGTTATGCATGAATTTAGGCTTGAGGGTAAATTCTCTATCAACAACCTCCCCAAAACTGCAAAGAATGAGTGGGTGATTTGTAGGGTGTTTCAGAAGAGTTCAAGTTGGAAGAAAACTCATATTTCTGGGATAATGAGATTGGACTCATCATTTGGCAATAATGAATTGGGTCCTTCTTCTATATTACCACCTTTGGCAGATTCACCACCACCTTCCATTTCCAATCATAATAATGATTCCAACAAGATCACAAAAGCACTTTCTGTGAATGATTCAGCTTACGTGCCCTGCTTCTCCAATCCAATTGATCCTTTCACCAACAATACCCCTTTTGGTGTTCCTTCTTCTAATGTTCTTCCAAGAATCACACCTTATGTTGGTGCTGCTTCATTCTACTCTTCTCATTTGGTTCTTCAAAATCAACCAAATTTCCCATTACAAGGTTCTAATTCTTACAGCACAACACAGGACCAGACCTTAATCAGAGCCTTATTTCTTGATGATAATAATAATAATGGTTTCAAATCTGAGAGGGAAATGGTTAGTGTTTCACAGGAAACAGGTCTTACTACTACTGATGTGAACAATGAAATCTCTTCAGTTGTTGTGTCAGATTTTGATATTGGTGGGAGGCACTTTGAAAATCTGAACCCTCCAATTGCTTCTTCAGTTGCTGCTATATCATTGGACCTTCCTACCATGTGGAATTATTGTTAG 1128 0.3936 MENFSTVSVLCKEEDQLDLPPGFRFHPTDEELISHYLYMKVTNTSFSARAIGEVDLNRSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATESGYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSDWVMHEFRLEGKFSINNLPKTAKNEWVICRVFQKSSSWKKTHISGIMRLDSSFGNNELGPSSILPPLADSPPPSISNHNNDSNKITKALSVNDSAYVPCFSNPIDPFTNNTPFGVPSSNVLPRITPYVGAASFYSSHLVLQNQPNFPLQGSNSYSTTQDQTLIRALFLDDNNNNGFKSEREMVSVSQETGLTTTDVNNEISSVVVSDFDIGGRHFENLNPPIASSVAAISLDLPTMWNYC* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1896 375 SUPERFAMILY NAC domain 16 169 IPR036093 GO:0003677|GO:0006355
Aev08g1896 375 Gene3D NAC domain 28 175 IPR036093 GO:0003677|GO:0006355
Aev08g1896 375 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 9 367 - -
Aev08g1896 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 367 - -
Aev08g1896 375 Pfam No apical meristem (NAM) protein 20 144 IPR003441 GO:0003677|GO:0006355
Aev08g1896 375 ProSiteProfiles NAC domain profile. 19 169 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1896 Aev-Chr8 17017204 17018974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1896 17 374 NAC Transcription Factor Family AT5G07680 52.514 4.91e-117 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aev08g1896 NAM 4.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1896 - - gmx:100798002 467.618