Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1859 ATGGTACTGACAGAAGAACAGAGAAAACAAGTCGAAGCGAATCGCCAAGCTGCACTCGCTAAACGCAAAGCATTCCTAGAATCCCAACAACAACAACAACAACTACAACATGCAAGATCAGAAAGAGACCCATGGCACCTTTTCAAGTGCCAAAAGCTCTCCCACCACAACCCACCCAAACAGCCCCTATCCCCTCCCAACCCTAACCCTAACCCTAACCCCATTATCAACCACAAGTTCATCGCTAGGCTCGAGATTTGCTCCCCTGATTCCTTCTCCATCACCCCTCTCCCTCTCCCCCCCAATCCCTTCCCCTCACCCGACACTTGCTTCTCCACACTCAACCACATCTTGTCCAATGTGATATTGTTGCACTACACGCAGATTCACGGTGGAGGGAGGGCCTGCGTGTACAATCTGTGTGACTACCGTGCTGTCTTGAAGTGCCTGAAAGGTGCTATGGAGCTTGAGGTGGAGGAGATTCCGTGGGGGACATTGAATGTTATCGAGAGGATGTCACATTCATTTGTTTCCGGGCGGTGGAACCCGGTGAGGCCAGAGTATTTGAGCGATGAGGAGGTGGATGAGCTGGTGGCGAAGCTGCCAAGGAGATTGGCGGGCGCATTGCTGCCTTTCCAGGTGGATGGGCTGAGGTTCGGCCTCAGAAGGGGTGGGAGGTGCCTCATTGCTGATGATATGGGCCTCGGGAAGACGCTGCAGGCTATTGCTATTGCAGGGTGTTTCATGGATGAAGGTTCTATACTTGTGGTTTGCCCTGCTGTTTTGCGTTTTTCATGGGCGGAAGAAATCGAGCGGTGGCTTCCTAACTGTTTGCCTGCCGATATTCATCTTGTTTTTGGTCATCAAGATAATCCTGTATATTTAACAAGATGCCCTAGAGTTGTGGTTATTTCATATACCATGCTCCATCGTTTAAGGAAGAGCATGCTTGAGCATGAGTGGGCTGTCTTGATTGTTGATGAATCTCATCATGTTCGATGTACAAAGAAAGCAGAGCCAGGAGAGATAAAGACTGTTCTTGATGTGGCAACAAAAGTCAAGCGTATAATTCTGCTATCAGGGACACCTTCTTTGTCAAGACCGTATGACATTTTTCATCAGATAAATATGTTATGGCCTGGCTTGTTGGGGAAGACTAAGTATGAGTTTGCAAAAACTTATTGTGATTTCAAATATGTCAAGGGCATCCAAGGGAATTATTTTGCGGATTATTCCAAGGGCATTCGGTTGGAGGAGTTGAATGTGTTACTAAAGCAAACTGTTATGATTAGGCGTTTGAAGGAACACGTGTTGCAACAGTTACCTCCGAAAAGGCGGCAAATTATAAGACTTTTGTTGAAGAGATCAGATATAGTTGCCGCAAAAACTGCAATTGGCGCATTGAAGTATGGTGCTCCTGAAAGTGCAAGTGAAGAAGACATTTCTTTTGTAAACATGGATGAACCTGATGGAAGGCTTTCTTACCAGGAACTTGGAATCGCAAAGCTTTCTGGGTTTTGTGAATGGCTTTCCCTCCATCCTCTCATAGCAGGATCAGAGAGTTCTACTAAGATGATAATATTTGCTCATCACCACAAAGTCCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGGATTGGTTTTGTGCGAATTGATGGAAATACTCTTGCTAGGGACAGGCAATCAGCAGTAGTCTCATTTCGATCATCATCAGAGGTCAAAATTGCAATTATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAGCAGCACAAGATGTCTTGTTCTTGGAGCTACCTCAGTGCCCAACTATGATGCTTCAGGCTGAGGATAGAGCTCATCGACGTGGGCAAACAAATGCTGTTAATGTATATGTATTCTGTGGAAAGGATACCTGGGATGAGTCGCATTGGAAAAATATGAATAAAAGTTTGCACCATGTTTCATCAACAACAGATGGTAAATATGAAGGGATGAAAGAGATAGAGGTTGAAGGTATTTCTTATCTAGACACATCTCTTAAACCTGATAGTTGTGGTGATGAGCAATATGCAGTTGCACCCAAAGAGGAATTGAGTGAAATACCACTTGATAAGCAATCTTCCCCAGTAAATTCAAACGAATCAGAAGCAAATCAAGATGATAAGTCCAATGAGCAGGCTTCTTTTGACAATAACTCAATTTGTATTGCTAATGTTACGGAGGATAATTTTTCCTCCCTCAATTTTGGCAAGGCTTCAGTTTTGGATGCAAATGTTGATCTAGGTGTTGCTGATGCTGAGGAAAGATTGTCTGAAGAGAATTCTGATGACAAAGATCAAACAACAGAGTTTCAGGATAAGAAATCAATCCCACCAGCTGAAGCAGATGACAACCAACCTGTTCAGCTTGAAACCAATGAACATTGCTCTAATCAAGTTGATTCTCTTCGATTCGAGGTAAGCCCATACACCGGAAGGATCCACTTGTATTCTTGCACTTTGGGTACAGATATAAGACCACAGCCACTTTATGAAAATTTCCGACCTGAGGAACTTGAGTTGTTAAGCCCTGTTTCTGATGATGAGAAAAAGAAGATAGAGTTTGTATCTGCCAAGGACAATCCTGCTTATAGGCATGCACTTCTAGAGTTTGCGAATGAGTGGAAGAATTTGAGGCCAATTCAACGCAGGAAGTTACATGGAAAACCATTACAACTTCCTTTGGCAGTTGAATTGTGCTATTTGAGTGAAAGCAATAACCACAATAACAAGGGGTTATTAAATGGTGGAAGTAAACGACGTATGACACCTTTGGTGGAAATTAGCCATCCTTTACCATCAGACGCTGTTTGGAGGAGGGTTTTTCTGCGAGGTGGACGTGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCTGACAAATGAACCACTTTGTAAACTTTGTCAAAAGCAGTGCATGGGTAACAATGCCAAGACACCTGAATATTTTGAAGATCTTTTTTGTAACCTTGTCTGTTATGAAGAGTATCGCATGAGAACTAGCAATAGATTCCTTCGTCAGGAGCTTTTCCAAGTTGAACATGGTGTGTGCACAAATTGCCAATTAGACTGTCATAAGCTTGTTGAGCATATACGACCTTTATCATTGGAAAGACGGCGAGAGTACATTGAGAAAGTAGCACCAAAAGTTGCAAAGCGAAAGAAAATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCTTGGCATGCTGATCACATTATTCCAGTATATCAAGGCGGAGGTGAATGCAAATTAGAGAATATGAGAACTCTGTGTGTGGCGTGCCATCATGATGTTACTACAGCGCAATGTGCTGAACGACGCAAAGCAAGAGCAAATGCCAGGAAACAACTAAAATTGATAATGGACAACATGAAAAATGGTCTGAATAGTGCTACTGGCTCTGATGTTAAGGAGCATGATGATGAGCTTCTCAATGCACAGGAGGGTGTACTTGAAGACGATCTTTTAGTCAAGGTTCCTGGAAGTGCCTATTCTCTATCTAATAATAGCCAACGAACAGGAAAGGAAGGAGTTTCCTGA 3579 0.4322 MVLTEEQRKQVEANRQAALAKRKAFLESQQQQQQLQHARSERDPWHLFKCQKLSHHNPPKQPLSPPNPNPNPNPIINHKFIARLEICSPDSFSITPLPLPPNPFPSPDTCFSTLNHILSNVILLHYTQIHGGGRACVYNLCDYRAVLKCLKGAMELEVEEIPWGTLNVIERMSHSFVSGRWNPVRPEYLSDEEVDELVAKLPRRLAGALLPFQVDGLRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMDEGSILVVCPAVLRFSWAEEIERWLPNCLPADIHLVFGHQDNPVYLTRCPRVVVISYTMLHRLRKSMLEHEWAVLIVDESHHVRCTKKAEPGEIKTVLDVATKVKRIILLSGTPSLSRPYDIFHQINMLWPGLLGKTKYEFAKTYCDFKYVKGIQGNYFADYSKGIRLEELNVLLKQTVMIRRLKEHVLQQLPPKRRQIIRLLLKRSDIVAAKTAIGALKYGAPESASEEDISFVNMDEPDGRLSYQELGIAKLSGFCEWLSLHPLIAGSESSTKMIIFAHHHKVLDGVQEFICEKGIGFVRIDGNTLARDRQSAVVSFRSSSEVKIAIIGILAAGFGLDFSAAQDVLFLELPQCPTMMLQAEDRAHRRGQTNAVNVYVFCGKDTWDESHWKNMNKSLHHVSSTTDGKYEGMKEIEVEGISYLDTSLKPDSCGDEQYAVAPKEELSEIPLDKQSSPVNSNESEANQDDKSNEQASFDNNSICIANVTEDNFSSLNFGKASVLDANVDLGVADAEERLSEENSDDKDQTTEFQDKKSIPPAEADDNQPVQLETNEHCSNQVDSLRFEVSPYTGRIHLYSCTLGTDIRPQPLYENFRPEELELLSPVSDDEKKKIEFVSAKDNPAYRHALLEFANEWKNLRPIQRRKLHGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEISHPLPSDAVWRRVFLRGGRGKKEKEYTQGWSLTNEPLCKLCQKQCMGNNAKTPEYFEDLFCNLVCYEEYRMRTSNRFLRQELFQVEHGVCTNCQLDCHKLVEHIRPLSLERRREYIEKVAPKVAKRKKMLEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHHDVTTAQCAERRKARANARKQLKLIMDNMKNGLNSATGSDVKEHDDELLNAQEGVLEDDLLVKVPGSAYSLSNNSQRTGKEGVS* 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1859 1192 MobiDBLite consensus disorder prediction 691 724 - -
Aev08g1859 1192 Gene3D - 496 727 IPR027417 -
Aev08g1859 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 671 IPR027417 -
Aev08g1859 1192 MobiDBLite consensus disorder prediction 764 795 - -
Aev08g1859 1192 Gene3D - 1003 1138 - -
Aev08g1859 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 218 381 IPR014001 -
Aev08g1859 1192 SMART ultradead3 205 400 IPR014001 -
Aev08g1859 1192 Pfam HNH endonuclease 1078 1110 IPR002711 GO:0003676|GO:0004519
Aev08g1859 1192 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1134 - -
Aev08g1859 1192 CDD HNHc 1072 1112 IPR003615 -
Aev08g1859 1192 Pfam Helicase conserved C-terminal domain 517 619 IPR001650 -
Aev08g1859 1192 CDD DEXHc_HARP_SMARCAL1 209 432 - -
Aev08g1859 1192 CDD SF2_C_SNF 520 630 - -
Aev08g1859 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 432 IPR027417 -
Aev08g1859 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 665 IPR001650 -
Aev08g1859 1192 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1134 - -
Aev08g1859 1192 Gene3D - 185 456 IPR038718 -
Aev08g1859 1192 Pfam SNF2-related domain 227 456 IPR000330 GO:0005524|GO:0140658
Aev08g1859 1192 SMART helicmild6 536 619 IPR001650 -
Aev08g1859 1192 Coils Coil 1 23 - -
Aev08g1859 1192 MobiDBLite consensus disorder prediction 764 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1859 Aev-Chr8 16470209 16496621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1859 524 672 RAD5 or RAD16-like Gene Family AT1G11100 35.099 3.49e-15 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aev08g1859 SNF2_N 5.9e-25 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1859 K25861 - gmx:100788690 1708.35