LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g1846	ATGGGCTGCGTGAGCTCCAAGCAGGCGGTGTCGGTAACGCCTGCGATTGACCACTCCGGCGCGTTTCGCGCCAATGCCGCCGGCGATTCGGGAAGAAAAACGCTGGACTCGAGCACCACCACCACCACCACCACCACCATCATCAACTGTAATAGCAACAGTAGCAACGGCAAGAAGAAGAAGAAGAATCAGAGGAGTGACTCGGCCGGTGTGACTCGGAGCGAGTTAGGCGAGTCAGGGAGAGCGAGTTCCAACGCCTGCGAGTCGCTGAGCTTCAGGCTTGGCAACTTCCACAAGTACGCCGAAGGTGAACACGTCGCTGCCGGATGGCCAGCCTGGCTCAGCGCCGTCGCCGGCGAAGCCATCCACGGCTGGGTTCCCCTCCGAGCCGACGCATTCGAAAAACTCGAGAAGATTGGACAGGGTACTTATAGCAGTGTGTTTCGTGCAAAGGACCTTGATTCTGGGAAGATTGTGGCGTTAAAGAAGGTACGGTTCGATAATTTTGAACCTGAGAGTGTGAGATTCATGGCGCGTGAGATAACGATCCTGAGGAGACTCGATCACCCGAATATCGTGAAACTTCAGGGCTTGATAACTTCTAGGTTGTCGTGTAGCATATATCTTGTATTCGAGTACATGGAACATGACATCACAGGGCTCGTTTCGAGCCCTGATGTCAAATTCAGTGAGCCACAGATTAAGTGTTACATGAAGCAGTTGTTGTCTGGTCTTGAGCATTGTCATTCACGGGGCGTGATGCACCGTGACATCAAGGGATCGAATTTGTTGGTGAACAATGAGGGGATATTGAAGGTGGCGGATTTTGGATTGGCGAATTTCGCTAGTTCCGGGCACAGGCATCCCCTCACTAGCCGCGTCGTCACTCTGTGGTACAGGCCGCCGGAGCTTTTGCTCGGCGCGACGGATTATGGCCCTTCTGTGGATCTGTGGAGTGTTGGATGTGTATTCGCGGAGCTGCTTGTCGGGAAGCCTATACTTCAGGGGAGAACAGAGGTTGAACAATTGCACAAAATCTTCAAGCTTTGTGGCTCCCCAGCTGATGAATATTGGAGAAAGACAAGACTACCTCATGCAACTTTGTTTAAGCCACAGCAAGCATATGATAGTTGCCTCCGAGAGTCCTTTAAAGATTTGCCTTCATCCAGTGTAAATCTGCTGCAAACTCTTCTTTCCATCGAACCATACAAACGTGGGACTGCCACATCTGCTCTCTCATCAGAGTATTTCAATGCAAAACCTCTTGCATGTGACCCATCAAGCTTGCCATCATACCCGCCTAGCAAGGAAATTGATGCAAAACACAGGGAAGAGTCAAGGAAAAAGATCGGTGGCCGAGCTCGTGGAGCTGAAACAAGAAAACCATCAAGAAAGGCACTAGGATTCAATAAATTAACTCCAGCAGAGGATTTGCCCAGTCAAACTCAAACTTCCCAAAAGGTCAATGGTAGATCTGTTTGCATCCTTAAAGAAGATAAGACTAAAACAGGTCAGGAGGAACAAAAGCCCTATACTGTTAAATTTGAAGATGCTTCCCATACGAAGAATGCATCTCAAGAAGATATTCCCTTTTCTGGACCATTACAAGTTTCAACATCAAGTGGCTTTGCTTGGGCGAAAAGCCGTAAAGATGACACTTCAATTCGATCCCACCGTCAAACTATTTCAAGAGGAAATGTTTTAAATCCCTTAGAAACTTCTAAACTAAAATCTAGGAATAATTTAGAAAACAGAAACCAGGAAAGTAAGGAGTTTTCTGGGGGACGCACTAGCTCCAGGGGCAGCGACCTCCTTGACATTTGTAAGCTTTCAATGCAGAATCAGTGGAGTAAGTTTGATCGCCCAGATTCATTTGACGCTTCTGATGAATACCACTCACAAGAACTCTCTATGGCACTTTATCATAGGGAAGATTCAATATCCAAGAGAAGCAACTTGAGTTTTCAGGATCAAGGAGAAAAGGTTGAATTTTCAGGACCCCTGCTATCTCAAATGCACACAGTTGACGAGCTCTTAGAAAAACATGAGCGCCACATCCGGCGCACTGTTCGAAGGTCATGGTTTCAGAAAGCTAAGAAGCATGGGAAGTAA	2112	0.4777	MGCVSSKQAVSVTPAIDHSGAFRANAAGDSGRKTLDSSTTTTTTTTIINCNSNSSNGKKKKKNQRSDSAGVTRSELGESGRASSNACESLSFRLGNFHKYAEGEHVAAGWPAWLSAVAGEAIHGWVPLRADAFEKLEKIGQGTYSSVFRAKDLDSGKIVALKKVRFDNFEPESVRFMAREITILRRLDHPNIVKLQGLITSRLSCSIYLVFEYMEHDITGLVSSPDVKFSEPQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFASSGHRHPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPADEYWRKTRLPHATLFKPQQAYDSCLRESFKDLPSSSVNLLQTLLSIEPYKRGTATSALSSEYFNAKPLACDPSSLPSYPPSKEIDAKHREESRKKIGGRARGAETRKPSRKALGFNKLTPAEDLPSQTQTSQKVNGRSVCILKEDKTKTGQEEQKPYTVKFEDASHTKNASQEDIPFSGPLQVSTSSGFAWAKSRKDDTSIRSHRQTISRGNVLNPLETSKLKSRNNLENRNQESKEFSGGRTSSRGSDLLDICKLSMQNQWSKFDRPDSFDASDEYHSQELSMALYHREDSISKRSNLSFQDQGEKVEFSGPLLSQMHTVDELLEKHERHIRRTVRRSWFQKAKKHGK*	704

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	559	577	-	-
	Aev08g1846	703	Pfam	Protein kinase domain	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev08g1846	703	CDD	STKc_CDK9_like	133	417	-	-
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	517	601	-	-
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	427	491	-	-
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	524	547	-	-
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	436	465	-	-
	Aev08g1846	703	Gene3D	Transferase(Phosphotransferase) domain 1	216	454	-	-
	Aev08g1846	703	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	63	696	-	-
	Aev08g1846	703	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	253	265	IPR008271	GO:0004672\|GO:0006468
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	475	491	-	-
	Aev08g1846	703	ProSiteProfiles	Protein kinase domain profile.	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev08g1846	703	SUPERFAMILY	Protein kinase-like (PK-like)	126	421	IPR011009	-
	Aev08g1846	703	ProSitePatterns	Protein kinases ATP-binding region signature.	139	162	IPR017441	GO:0005524
	Aev08g1846	703	MobiDBLite	consensus disorder prediction	47	81	-	-
	Aev08g1846	703	PANTHER	CELL DIVISION PROTEIN KINASE	63	696	-	-
	Aev08g1846	703	SMART	serkin_6	133	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aev08g1846	703	Gene3D	Phosphorylase Kinase; domain 1	120	215	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev08g1846	Aev-Chr8	16269139	16274534	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev08g1846	125	449	Core Cell Cycle Gene Families	AT5G10270	50.440	5.27e-114	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Aev08g1846		Pkinase	7.5e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev08g1846	-		-	gmx:100803328	1154.81