Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1561 ATGGAGCTTGATTTGAATCAGGAGCCTTTAGACGCAGCTCGTACTTCAATGACTGAATTGGGTTCTATTTTGGATGAACTAGAATCTGCCCATGGACACATACATGATAGAATCAGGCACCTTGAAGCAGTGACTTCCAGAGCTCGGCAGCGTCATCGGTGGCCACCGTTTCACTCCCCGATTCAGATAACAAACTTCACAGGAGAAGCCACAACAGCTGATGTTCAAGATGGAGGGAGGGAGAACCAGGAAATTGAAGAAGGGGAGAGTAAGGGTACCCATTTAATTGCTAAGGCATTGGGTGTGGAAGCAGATGTTGGTAAAGTAGAGGGAGGCTCTGGGAATTTTTTTGATTGTAATATATGTTTGGACATTGCGAGAAATCCTGTTCTGACCTGCTGCGGTCACTTGTTTTGTTGGTCGTGCTTCTATCAGTTGTCATATGCTTATTCGAACGCAAAGGAATGCCCTGTTTGTAAAGGAGAGGTCACTGAGAAAGGCATTATTCCGATCTATGGCAATGGAAGTGGCACTAGTAATTGTCAGTCAGAATCAAAAGAAGCCAGTTTGAAGGTTCCTCCTCGTCCCCAAGCACCTAGAGTCGAGAGTATAAGGCAGCAACTTATAAGTCAAGGAGCATCTTCTTCTACAATCAGGAATCTTCGGCGGTTTCATAGCCTAATTAGCGGACGAGGAGAGCGGGTAAGACAAGAAATCCCCAATGTTGCAACTGGTAGAAATAATGGAGAGCGGGTACGGCCAGAAATCCCCAATGTGGCAACTGGTAGAAATAATGTTCCCGTGCAATCTCACCCGGAGATGGACAATAATCTACATGGTCGTCCTCAGCCAATTTCAAGGTTGTTAGTGCAAGGAACTGCTTCATTTCCATCCCTCTCATCAGCAATAAATTCTGCAGAAAGATTAGTTGAGGACCTTGAATCATATGTTCATGGTCACCACATAGGAGGAAGCATGCAGTTAAATTCTCATGCTCCTAATACATTTTCGACCTTCAATGTTGCTGCTGCAAACCATTCAGAGAACCTTTCTCGATATGTGCCTGCAACCGATTCTGCAGCCGCAGCTTCAGCTTCCGTTTCTCCTTTAAGAATAAATGATGACACAGCAATCCAAACAACAGATAGTAGCGTACAGATTTTATTGCCTGACCCCCCTTCATCTTCCAACAGAAGAAGAACTCGTGTTTCAAGACGGGATTCAAATGAGCCCAGAAGAAGAAGGTTTAGATGA 1254 0.4474 MELDLNQEPLDAARTSMTELGSILDELESAHGHIHDRIRHLEAVTSRARQRHRWPPFHSPIQITNFTGEATTADVQDGGRENQEIEEGESKGTHLIAKALGVEADVGKVEGGSGNFFDCNICLDIARNPVLTCCGHLFCWSCFYQLSYAYSNAKECPVCKGEVTEKGIIPIYGNGSGTSNCQSESKEASLKVPPRPQAPRVESIRQQLISQGASSSTIRNLRRFHSLISGRGERVRQEIPNVATGRNNGERVRPEIPNVATGRNNVPVQSHPEMDNNLHGRPQPISRLLVQGTASFPSLSSAINSAERLVEDLESYVHGHHIGGSMQLNSHAPNTFSTFNVAAANHSENLSRYVPATDSAAAASASVSPLRINDDTAIQTTDSSVQILLPDPPSSSNRRRTRVSRRDSNEPRRRRFR* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1561 417 MobiDBLite consensus disorder prediction 386 417 - -
Aev08g1561 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 211 IPR013083 -
Aev08g1561 417 MobiDBLite consensus disorder prediction 244 267 - -
Aev08g1561 417 Pfam Zinc finger, C3HC4 type (RING finger) 118 164 - -
Aev08g1561 417 CDD RING-HC_AtRMA_like 117 161 - -
Aev08g1561 417 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 402 - -
Aev08g1561 417 MobiDBLite consensus disorder prediction 180 199 - -
Aev08g1561 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 402 IPR045103 GO:0005783|GO:0006511|GO:0061630
Aev08g1561 417 ProSiteProfiles Zinc finger RING-type profile. 119 160 IPR001841 -
Aev08g1561 417 SUPERFAMILY RING/U-box 115 167 - -
Aev08g1561 417 SMART ring_2 119 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1561 Aev-Chr8 11287941 11289194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1561 80 366 C3H Transcription Factor Family AT3G58030 34.259 1.13e-40 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1561 K10666 - gmx:100793230 365.925