Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1538 ATGGCCATGGCTGTGGCCGTGGAACTGAAGAACTACCTCATCCATGGCCACATCACCTCCTTCAACCACCTAAAACTCTTCCACTGCCGCCTCCTCCGGCTCCACCTCCACCATGACAACCACCTCCTCAACATCATCCTCCACCACTCCCTCCTCCTCTTCCGAACCACCCGCTACGCCAAACTCCTCTTTTCCCAAACCACACACCCAAACATATACCTCTTCAACACCATGCTGCGCGGCCTCGTCTCCAACGACTCCTTCAACGACGCCGTTTCACTCTACTCCTCAATGCGCCTTTCTGGCTTCATGCCCGACAACTACACCTTCCCCTTCATCCTCAAAGCATGCGCTAGGCTCTCCAATCTCCCTCTTGGCCTCAGCCTCCACTCCCTCATCGTCAAAACGGGATTCGACGGTGACGTGTTCGTCAAGACAAGCCTTGTTGGTTTGTATTCCAAATGCGGCCACTTGAACAATGCACGCAAGATGTTCGACGATATTCCCCAGAAAATGAGAAACGTTGTTTCGTGGACTGCGATCATTTGCGGGTATATTGGGTGTGGGCTTTATAAGGAAGCTGTTGGTTTGTTTAGAGAGTTGTTGGAGATGGGTGTGAGGCCTGATAGTTTTACCCTTGTCAGGGTTTTGTATGCTTGTTCTCAGTTAGGAGACTTGGTTAGTGGAGAGTGGATTGAGAGGTATATGGACGAGAATGGGTTTTTTAGGAATGTCTTTGTGGCAACTTCTTTGGTTAATATGTACGCGAAATGCAGTAGCATGGAGAAGGCGTGCCGCGTGTTTAATGGAATGCCCGAGAAGGATATTGTTTGTTGGAGTGCCATGATTCAGGGATATGCTTCTAATGGGATGCCGAAGGAGGCTATCGAGTTGTTCTTTGAGATGCAGAGGGAGGGTCTGAGGCCGGATTGCTATGCGATGGTGGGAGTTCTTTCTGCTTGTGCGAGGTTGGGGGCGCTGGAGTTGGGGCATTGGGCTAAGGGCTTGATGGATGCTGCTGAGTTTTTGCATAATCCTGTCTTGGGTACTGCCTTAATAGACTTCTATGCAAAATGTGGAAGTATTGCATGGGCATTGGGGATTTTCAGAACAATGGAGGAAAAAGATCGTGTGGTGTTCAATGCTGTGATTTCTGGGCTGGCTATGAATGGACATGTTAGGGCTACGTTTGGAGTGTTTGGCCAAATGGAGAAGTGTGGGATTTGGCCTGATGAGAATACTTTTGTTGGTCTGCTTTGTGCGTGTACTCATGCTGGTTTGGTTAATGATGGTCGCCATTGTTTTGATAGCATGAGTCGTGTTTTTTCTGTAACTCCTACTATCGAACATTATGGATGCATGGTGGATCTCCTAGCCCGTGCAGGATTATTGGTTGAAGCACAGGATTTGATCAAGAGTATGCCAATGAAGCCGAATGCTATTGTTTGGGGGGCATTGTTTGCAGGATGTAGGTTACATCGTGATGCCAAATTGGCAGAACACGTGTTGAAGCAGCTGATTGAGTTAGAACCATGGAATTCAGGGCATTATGTTCTCTTATCAAATATTTATTCAGCAAATCGTAGATGGGATGAAGCAGAAAAAATCAGGTCATCTCTGAATGATAAAGGGATGCAAAAATTACCTGGGTGTAGTTGGGTTGAAGTTGATGGGGTCGTTCATGAATTCCTTGTAGGAGACACTTCCCATCCTTTGTCGAACAAGATATATGAAAAACTTGAAAGTTTGTTTAAAGACTTGAGAGAACTTGGTTATAATCCAACCACTGAGTTTGTGCTCTTTGATATAGAGGAGGAGGAGAAGGAGTACTTCCTCGGCTGTCATAGTGAGAAGTTAGCTGTTGCATTTGCATTGATCAGTACCAGTGCTGATGATGTGATTCGCGTTGTTAAAAATCTTCGTGTATGTGGCGATTGTCATGAGGCCATAAAACTCATTTCAAGAGTCACTGGGAGAGAGATAATAATAAGGGATAATAATAGATTCCATTGTTTTAGCAAAGGCTCATGTTCCTGTGGAGATTATTGGTCGAGGATATGTGTGAAGAACCTTCCAAAATATGTTGTCGAGGATCGACTTAAAGAATTTTTTTCTGAGAAAGGAGAAATCACGGATGTCAAGCTTATGCGTACCAAAGATGGTAAGAGTCGCCAATTTGCATTTATTGGATTTCGTACTGAGCAGGAAGCTCAAGAAGCGATTCAATATTTTAACAAGTCATACCTTGACACTTGTAGAATTACTTGTGAGGTGGCTCGAAAACGTGGTGATGCAGATCTTCCTCGTCCCTGGAGTCGACATTCAACAAATAAAGAGAATAAGGTGACCCCAGACGTCAAGAAACATGCTGGACCAAAAGAGCAAGTACAAGGAAACAATTCTGAGGACATTGATGACCCACAACTTCAAGAATTCCTTCAAGTTATGCAGCCTCGTGCTAAGTCGAAAGTGTGGGCAAATGATACATCAGTGGTGTCCACTGCTGGCGAGAAGCAAACAGTACCAAATAAGGAAAGCATAGATACATCAGTTGCAACCCATGCCAGTTTAGATCAGAGTGGCTCATTAGTGGATCACGTTCCTGATAGTCCTGAACCTGAACAGTCAAATGAACCTGAACATGATGAGGCCATTTCTGATATGGATTATTTCAAAAGTAGAGTGACAAATGAGTGGTCTGATTCTGAAAGTGGTGATGATGTTGATTCTATAAGTGCTTCTGGTGGTGATGATGACAAAGACAGTGATTGTACTGCTAGTGATGAAGATGAAGAAAATTTCGATAAGAAATCTTTGGAACAAATCCAAAGAAAGGGAGCTCAAGAGTCAGATGTAATGGAGCAAACAGATACTTGTGGAGAGGATGTTGCCCATGAAAAGTCTCAAGTGAATTCAGATGAGCAGGGTGGCCAACCATCAAATTCTGAAGATAGGACAGGAGTTTCTAAGTCCTGTCGACTATTTGTCCGCAATCTGCCATATACAACCAATGAGGAAGAACTGGAAGAGCATTTTAGTAAGTTTGGCAGTGTCTCACAAGTCCATCTTGTCATTGACAAAAGTACAAAACGATCCAAAGGAATAGCATATATTCTTTATTCTTTTCCAGAATTTGCAGCCAGGGCACTGGAAGAGTTAGATCATTCAATCTTTCAAGGAAGATTGTTGCACGTTATGCCAGCCATTCAAAGACCCAACAATAAAGAGAACAATGTTTCCAAGGACCAAAGTGCGAAAACTCTCAAACAACAGAGAGAAGAAAAGAGGAAAGTTGCTGAAGCTGGTGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGTTCTGACACAGTTGTGGAAAATATTGCTCGGAAATATGGTGTCAGTAAAAGTGATTTATTAGACCGAGAAGCTGATGATCTTGCTGTACGGATTGCTTTGGGAGAAACTCAAGTGATTTCAGAGACAAAAAAGGCATTTACAAATGCAGGAGTGAATGTGGAGTCTTTGGAGGCACTTGCCAACGGAAAAGTTGATGGCTTAAAAAGAAGCAATCATGTACTTTTAGTGAAGAACCTACCATATGGTTCTACAGAAAATGAACTTGCAAAGATGTTTGGGAAATTCGGTAATTTGGACAAAATTATTCTCCCTCCAACAAAGACATTGGCCCTGGTTATTTTCCTTGAATCAGCAGAAGCTCGAGCCGCATTTAGAGGTTTAGCTTACAAGCGCTACAAGGATGCTCCATTATACTTGGAATGGGCTCCATCTGACATTCTTAACCCAAGTCCAGCGTCTGAAAGTAATGACCTGAATGCTGCAATTGGTGAAAATGATGCCAAGCGGGTGATATTGGAGCAACATGTACAAAGAATATCAGATGTGGACATTGATCCAGACAGAGTTGAGGCTCGGTCCTTGTTCGTCAAGAACCTCAATTTCAAAACAACAGATGAGAGTTTGAGGAAACATTTTAGTGAACACATGAAAGAGGGAAAAATTTTCAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTATTGAATTTGACTCTGTGGAGACTGCTACAAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGAAGGGCATGCTCTTATTTTACAACTTTGTCATGTCAAGAATGATGGGCAATCACAAAAGACAGTTGAGAAGGATAAGAGTTCAACAAAATTGCTAGTACGAAATGTTGCTTTTGAGGCAACAGAGAAGGATTTGAGGCAGTTATTTAGCCCATTTGGCCAGATTAAAAGCTTAAGGTTGCCAATGAAGTTCGGAAGTCATAGAGGCTTTGCTTTTGTTGAGTATATTACTCAGCAGGAGGCACAAAATGCACTTAAAGCACTTTCAAGCACCCATTTGTACGGAAGGCATCTTGTGATAGAGAGAGCAAAAGAAGGCGAGAGTTTGGAAGAACTTCGGGCACGCACAGCTGCTCAATTCAGTGATGAAAAAAATGGATTTCAAAATGCTACTAAGTTATCCTTGAAAAGGAAGCGAATGGCTATCTTGGATGAAGGAAAGATGAAGTTTGAAAGTATGGCTGATTAG 4599 0.4299 MAMAVAVELKNYLIHGHITSFNHLKLFHCRLLRLHLHHDNHLLNIILHHSLLLFRTTRYAKLLFSQTTHPNIYLFNTMLRGLVSNDSFNDAVSLYSSMRLSGFMPDNYTFPFILKACARLSNLPLGLSLHSLIVKTGFDGDVFVKTSLVGLYSKCGHLNNARKMFDDIPQKMRNVVSWTAIICGYIGCGLYKEAVGLFRELLEMGVRPDSFTLVRVLYACSQLGDLVSGEWIERYMDENGFFRNVFVATSLVNMYAKCSSMEKACRVFNGMPEKDIVCWSAMIQGYASNGMPKEAIELFFEMQREGLRPDCYAMVGVLSACARLGALELGHWAKGLMDAAEFLHNPVLGTALIDFYAKCGSIAWALGIFRTMEEKDRVVFNAVISGLAMNGHVRATFGVFGQMEKCGIWPDENTFVGLLCACTHAGLVNDGRHCFDSMSRVFSVTPTIEHYGCMVDLLARAGLLVEAQDLIKSMPMKPNAIVWGALFAGCRLHRDAKLAEHVLKQLIELEPWNSGHYVLLSNIYSANRRWDEAEKIRSSLNDKGMQKLPGCSWVEVDGVVHEFLVGDTSHPLSNKIYEKLESLFKDLRELGYNPTTEFVLFDIEEEEKEYFLGCHSEKLAVAFALISTSADDVIRVVKNLRVCGDCHEAIKLISRVTGREIIIRDNNRFHCFSKGSCSCGDYWSRICVKNLPKYVVEDRLKEFFSEKGEITDVKLMRTKDGKSRQFAFIGFRTEQEAQEAIQYFNKSYLDTCRITCEVARKRGDADLPRPWSRHSTNKENKVTPDVKKHAGPKEQVQGNNSEDIDDPQLQEFLQVMQPRAKSKVWANDTSVVSTAGEKQTVPNKESIDTSVATHASLDQSGSLVDHVPDSPEPEQSNEPEHDEAISDMDYFKSRVTNEWSDSESGDDVDSISASGGDDDKDSDCTASDEDEENFDKKSLEQIQRKGAQESDVMEQTDTCGEDVAHEKSQVNSDEQGGQPSNSEDRTGVSKSCRLFVRNLPYTTNEEELEEHFSKFGSVSQVHLVIDKSTKRSKGIAYILYSFPEFAARALEELDHSIFQGRLLHVMPAIQRPNNKENNVSKDQSAKTLKQQREEKRKVAEAGGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVISETKKAFTNAGVNVESLEALANGKVDGLKRSNHVLLVKNLPYGSTENELAKMFGKFGNLDKIILPPTKTLALVIFLESAEARAAFRGLAYKRYKDAPLYLEWAPSDILNPSPASESNDLNAAIGENDAKRVILEQHVQRISDVDIDPDRVEARSLFVKNLNFKTTDESLRKHFSEHMKEGKIFSVKVKKHLKNGKNVSMGFGFIEFDSVETATNVCRDLQGTVLEGHALILQLCHVKNDGQSQKTVEKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGSHRGFAFVEYITQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDEKNGFQNATKLSLKRKRMAILDEGKMKFESMAD* 1533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1538 1532 MobiDBLite consensus disorder prediction 1073 1101 - -
Aev08g1538 1532 MobiDBLite consensus disorder prediction 857 989 - -
Aev08g1538 1532 CDD RRM6_RBM19_RRM5_MRD1 1406 1480 - -
Aev08g1538 1532 Pfam E motif 493 555 IPR046848 -
Aev08g1538 1532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Aev08g1538 1532 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 5 677 - -
Aev08g1538 1532 SUPERFAMILY RNA-binding domain, RBD 1287 1394 IPR035979 GO:0003676
Aev08g1538 1532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1306 1389 IPR000504 GO:0003723
Aev08g1538 1532 MobiDBLite consensus disorder prediction 765 792 - -
Aev08g1538 1532 Pfam DYW family of nucleic acid deaminases 591 683 IPR032867 GO:0008270
Aev08g1538 1532 SMART rrm1_1 1407 1478 IPR000504 GO:0003723
Aev08g1538 1532 SMART rrm1_1 685 757 IPR000504 GO:0003723
Aev08g1538 1532 SMART rrm1_1 993 1066 IPR000504 GO:0003723
Aev08g1538 1532 SMART rrm1_1 1187 1254 IPR000504 GO:0003723
Aev08g1538 1532 SMART rrm1_1 1307 1385 IPR000504 GO:0003723
Aev08g1538 1532 Pfam PPR repeat family 173 219 IPR002885 -
Aev08g1538 1532 Pfam PPR repeat family 376 422 IPR002885 -
Aev08g1538 1532 Pfam PPR repeat family 274 323 IPR002885 -
Aev08g1538 1532 Pfam PPR repeat family 70 119 IPR002885 -
Aev08g1538 1532 Gene3D Tetratricopeptide repeat domain 348 582 IPR011990 GO:0005515
Aev08g1538 1532 Gene3D Tetratricopeptide repeat domain 21 116 IPR011990 GO:0005515
Aev08g1538 1532 TIGRFAM PPR: pentatricopeptide repeat domain 74 106 IPR002885 -
Aev08g1538 1532 TIGRFAM PPR: pentatricopeptide repeat domain 249 277 IPR002885 -
Aev08g1538 1532 TIGRFAM PPR: pentatricopeptide repeat domain 277 311 IPR002885 -
Aev08g1538 1532 TIGRFAM PPR: pentatricopeptide repeat domain 378 411 IPR002885 -
Aev08g1538 1532 TIGRFAM PPR: pentatricopeptide repeat domain 176 210 IPR002885 -
Aev08g1538 1532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 684 761 IPR000504 GO:0003723
Aev08g1538 1532 MobiDBLite consensus disorder prediction 765 805 - -
Aev08g1538 1532 CDD RRM4_RBM19_RRM3_MRD1 1186 1257 - -
Aev08g1538 1532 SUPERFAMILY RNA-binding domain, RBD 684 770 IPR035979 GO:0003676
Aev08g1538 1532 MobiDBLite consensus disorder prediction 970 988 - -
Aev08g1538 1532 Gene3D - 1403 1506 IPR012677 -
Aev08g1538 1532 Gene3D - 1180 1280 IPR012677 -
Aev08g1538 1532 SUPERFAMILY RNA-binding domain, RBD 1396 1485 IPR035979 GO:0003676
Aev08g1538 1532 Gene3D - 681 801 IPR012677 -
Aev08g1538 1532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Aev08g1538 1532 Gene3D - 1302 1402 IPR012677 -
Aev08g1538 1532 Pfam PPR repeat 350 375 IPR002885 -
Aev08g1538 1532 Pfam PPR repeat 450 475 IPR002885 -
Aev08g1538 1532 MobiDBLite consensus disorder prediction 1086 1101 - -
Aev08g1538 1532 MobiDBLite consensus disorder prediction 871 901 - -
Aev08g1538 1532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Aev08g1538 1532 MobiDBLite consensus disorder prediction 930 944 - -
Aev08g1538 1532 SUPERFAMILY RNA-binding domain, RBD 991 1256 IPR035979 GO:0003676
Aev08g1538 1532 MobiDBLite consensus disorder prediction 823 844 - -
Aev08g1538 1532 CDD RRM5_RBM19_like 1306 1387 IPR034423 -
Aev08g1538 1532 Gene3D Tetratricopeptide repeat domain 117 229 IPR011990 GO:0005515
Aev08g1538 1532 Gene3D Tetratricopeptide repeat domain 230 331 IPR011990 GO:0005515
Aev08g1538 1532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1308 1382 IPR000504 GO:0003723
Aev08g1538 1532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 994 1064 IPR000504 GO:0003723
Aev08g1538 1532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1408 1475 IPR000504 GO:0003723
Aev08g1538 1532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 686 754 IPR000504 GO:0003723
Aev08g1538 1532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1188 1249 IPR000504 GO:0003723
Aev08g1538 1532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Aev08g1538 1532 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 677 - -
Aev08g1538 1532 CDD RRM1_MRD1 684 759 - -
Aev08g1538 1532 CDD RRM3_RBM19_RRM2_MRD1 993 1066 - -
Aev08g1538 1532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1186 1258 IPR000504 GO:0003723
Aev08g1538 1532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 992 1070 IPR000504 GO:0003723
Aev08g1538 1532 SMART rrm2_1 993 1066 IPR003954 GO:0003676
Aev08g1538 1532 SMART rrm2_1 685 757 IPR003954 GO:0003676
Aev08g1538 1532 SMART rrm2_1 1307 1385 IPR003954 GO:0003676
Aev08g1538 1532 SMART rrm2_1 1407 1478 IPR003954 GO:0003676
Aev08g1538 1532 Pfam E+ motif 560 585 IPR046849 -
Aev08g1538 1532 Gene3D - 913 1084 IPR012677 -
Aev08g1538 1532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1406 1482 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1538 Aev-Chr8 10923519 10943136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1538 63 683 Glycoside Hydrolase AT3G49170 37.937 1.96e-137 444
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1538 K14787 - gmx:100798742 1229.93