LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev08g1523	ATGGGAGAGGATGGATTAGTGGAATACCTGATACATTGGGAGGGTCAACAGCAGTGTGATGACAGTTGGGTTTCAGCAACCACGCTGCAGCAGCTTTTTCCATCATTCTCCAGGGGGGGGAGTAGTGATAGGCCAGGGAGCGTATTCTTCAAGTACCTATCAACAATGCTGTATTGGCACGCCAGCTACAAGACACCTCCTTCCCCAAGTGATCCAACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGACAGTTTGAGGATGTTACACGCCAAAAGAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATCCGAAATGTGCCGAGTACAAATATTATGAATATCAGCTTGCTCAAGAGGAAAAGGCCCTTGTGCAGTCTAGGGAACCACAGGCAAATCGTAATGGGGGTACGAGCATTTCATCTTCCAGACAAACACACACCCCTCAGAGATCATCGCAGCAGCAATCAACCTACCAAATCCCTGCTTCTGCGTTGTACGAAAGTGCTGAACTACCTAGGGCTTCTGGATCTTCAGTTCAAGCATTTTCAACCAGAAGCACAGATGAGCCCAGTGGATCTTCAAATGCCGATTCGTTAGCACTAATGGAATTCTACATGAAGAAAGCTGCTCGGGAAGAGAAGCTGAAACAGCCTAAGCAGTCAAAGGATGAGATGCCTCCTCCTGCTTCTCTTCAAGCTTCTGGGAAAAAAGGCCATCACATGGGTGATTACATTCCCCAGGAAGAACTTGAGAAGTTCTTGGCTAGCTGCAATGATGCAGCTGCACAAAAAGCCATAAAGGAGGCTGCAGAGAAGGCCAAAATCCAGGCTGATAATGTGGGCCACAAGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGCTTAGGCAGCTCGAGGAAGGGTATTGCAGATCCTATAATGGCAGGCAATGTTAAGAAAGATAACTTGGGGGTGGGTGCTGTCCAACCCGGGGAGGTTACTCCGGATGACGACATATATGAGCAGTACAAAAAGCGAATGATGCTCGGTTACCGCCACAGACCTAACCCTCTA	1080	0.4704	MGEDGLVEYLIHWEGQQQCDDSWVSATTLQQLFPSFSRGGSSDRPGSVFFKYLSTMLYWHASYKTPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDPKCAEYKYYEYQLAQEEKALVQSREPQANRNGGTSISSSRQTHTPQRSSQQQSTYQIPASALYESAELPRASGSSVQAFSTRSTDEPSGSSNADSLALMEFYMKKAAREEKLKQPKQSKDEMPPPASLQASGKKGHHMGDYIPQEELEKFLASCNDAAAQKAIKEAAEKAKIQADNVGHKLLSKMGWKEGEGLGSSRKGIADPIMAGNVKKDNLGVGAVQPGEVTPDDDIYEQYKKRMMLGYRHRPNPL	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev08g1523	360	MobiDBLite	consensus disorder prediction	131	166	-	-
	Aev08g1523	360	MobiDBLite	consensus disorder prediction	185	206	-	-
	Aev08g1523	360	SMART	G-patch_5	283	330	IPR000467	GO:0003676
	Aev08g1523	360	MobiDBLite	consensus disorder prediction	220	250	-	-
	Aev08g1523	360	Pfam	G-patch domain	286	329	IPR000467	GO:0003676
	Aev08g1523	360	ProSiteProfiles	SURP motif repeat profile.	77	120	IPR000061	GO:0003723\|GO:0006396
	Aev08g1523	360	Gene3D	Surp module	60	132	IPR035967	GO:0003723\|GO:0006396
	Aev08g1523	360	ProSiteProfiles	G-patch domain profile.	285	332	IPR000467	GO:0003676
	Aev08g1523	360	SUPERFAMILY	Surp module (SWAP domain)	62	128	IPR035967	GO:0003723\|GO:0006396
	Aev08g1523	360	PANTHER	SURP AND G PATCH DOMAIN-CONTAINING 1	48	360	-	-
	Aev08g1523	360	SMART	surpneu2	75	129	IPR000061	GO:0003723\|GO:0006396
	Aev08g1523	360	PANTHER	ARGININE/SERINE RICH SPLICING FACTOR SF4/14	48	360	IPR040169	-
	Aev08g1523	360	MobiDBLite	consensus disorder prediction	133	166	-	-
	Aev08g1523	360	Pfam	Surp module	76	125	IPR000061	GO:0003723\|GO:0006396

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev08g1523	274	328	C2H2 Transcription Factor Family	AT5G26610	45.455	3.09e-08	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev08g1523	K13096		-	gmx:100786213	483.411

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev08g1523	08	10793263	10798238	Aev08g1523	08	10793263	10798238	ECH