Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev08g1468 | ATGGCGGAGCCAGAGCAAAACCACCACGACGACGACGACCAATCTATGAAGAAGCAGAACAAGAAGAAGCTTCGCAAGAGGAAGAGGCCCCGCAAGACCGATCACGAAACCAATCACCATTCCAACGACGAAGAAGAAGAGAACGTAGAAGCAGGCTCTGCACAGAAGCAAAACACGCATGATGATAAGAAGAAGAAGAAGAAGAAAAGCCTTAAGAGTGGGAAAAAACAAACCGAAGAACAAGAAGATGAAGTAGAAGAAGAAGAAGTGGAAGAAGAAGTAGAAGAAGAGAAAAATATGAACAGCGTTGGTTCGGGAATTATGAGTAATGAGTTATTTTCTTCTCTTGGACTGTCTGAACCCACAACTAAAGCTATCATAGATATGGGTTTCCAGCGCATGACTCAGATTCAAGCAAAATCGATTCCGCCACTTCTGATAGGAAAAGATGTTCTTGGTGCTGCGAGGACGGGTTCTGGGAAAACCCTTGCGTTTTTAATTCCAGCTGTGGAATTGTTGTACAAGGTTCAGTTTACGCCTCGCAATGGAACTGGTGTTGTTGTGATATGTCCAACTAGAGAGCTTGCAATTCAGACACATGCTGTGGCAAAGGAATTGCTCAAGTATCATTCCCAAACTCTTGGATTGGTTATTGGAGGTTCGGGTAGAAAGGGAGAGGCTGAGCGCATTGTTAAAGGTGTAAATCTGCTGGTAGCAACACCTGGTCGTCTTCTTGATCACCTCCAAAATACAAAGGGATTCATATACAAAAACTTGAAATGCCTCATGATCGATGAAGCTGACAGGATACTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAACATACTTCCAAAGAATAGGCAAACGGCTTTGTTCTCTGCTACGCAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAACAAAGGTTACAAATGAAGGTTTGGAGCAGGGCTATGTTGTTGTTCCCTGTTCGAAGCGATTTGTTGTTCTATATTCATTCTTGAGGAGATATCAATCTACAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCAGTCAAATTCCACGCAGACCTTCTCAAGTGCGCTGGACTGGATTGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGAACAACTACCTTCTTTAACTTCTGCAAAGCAGAAAAGGGGATATTGCTTTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCAGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGAGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCGAAGGTCCCTGTTAAAGAGTTTGCATTCGATGAAAAGAAGCTTGCAAATATACAATCTCAACTGGAAAAGTTGGTGGCTGGCATTTATCATTTGAACACTATGGCTAAAGAGGCTTATAGGTCATATTTATTAGCATATAATGCACACTCTATGAAGGATATTTTCAATGTTCATCGCCTTGATCTACTGGCTGTTGCTGCTTCATTCTGTTTTTCAAATCCACCGAAGGTGAATCTGAACATAGACAGCAGTGCTTCAAAACATAGGAAGAAAATACGCAAAGTTGAACGAAAAATACGCGAAGTTGAAGCTTGA | 1743 | 0.4182 | MAEPEQNHHDDDDQSMKKQNKKKLRKRKRPRKTDHETNHHSNDEEEENVEAGSAQKQNTHDDKKKKKKKSLKSGKKQTEEQEDEVEEEEVEEEVEEEKNMNSVGSGIMSNELFSSLGLSEPTTKAIIDMGFQRMTQIQAKSIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYKVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLEQGYVVVPCSKRFVVLYSFLRRYQSTKVMVFFSSCNSVKFHADLLKCAGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEFAFDEKKLANIQSQLEKLVAGIYHLNTMAKEAYRSYLLAYNAHSMKDIFNVHRLDLLAVAASFCFSNPPKVNLNIDSSASKHRKKIRKVERKIREVEA* | 581 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev08g1468 | 580 | Gene3D | - | 328 | 577 | IPR027417 | - | |
| Aev08g1468 | 580 | Coils | Coil | 68 | 100 | - | - | |
| Aev08g1468 | 580 | SMART | DUF4217_3 | 492 | 555 | IPR025313 | - | |
| Aev08g1468 | 580 | MobiDBLite | consensus disorder prediction | 1 | 106 | - | - | |
| Aev08g1468 | 580 | Pfam | DEAD/DEAH box helicase | 135 | 306 | IPR011545 | GO:0003676|GO:0005524 | |
| Aev08g1468 | 580 | SMART | helicmild6 | 371 | 452 | IPR001650 | - | |
| Aev08g1468 | 580 | MobiDBLite | consensus disorder prediction | 35 | 60 | - | - | |
| Aev08g1468 | 580 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 111 | 139 | IPR014014 | GO:0003724 | |
| Aev08g1468 | 580 | MobiDBLite | consensus disorder prediction | 81 | 96 | - | - | |
| Aev08g1468 | 580 | Gene3D | - | 49 | 321 | IPR027417 | - | |
| Aev08g1468 | 580 | MobiDBLite | consensus disorder prediction | 20 | 34 | - | - | |
| Aev08g1468 | 580 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
| Aev08g1468 | 580 | CDD | DEADc_DDX18 | 122 | 319 | IPR044773 | GO:0003724|GO:0005524 | |
| Aev08g1468 | 580 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 142 | 317 | IPR014001 | - | |
| Aev08g1468 | 580 | SMART | ultradead3 | 130 | 335 | IPR014001 | - | |
| Aev08g1468 | 580 | Pfam | Domain of unknown function (DUF4217) | 493 | 553 | IPR025313 | - | |
| Aev08g1468 | 580 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 331 | 491 | IPR001650 | - | |
| Aev08g1468 | 580 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 | 60 | 558 | - | - | |
| Aev08g1468 | 580 | Pfam | Helicase conserved C-terminal domain | 347 | 451 | IPR001650 | - | |
| Aev08g1468 | 580 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 263 | 271 | IPR000629 | - | |
| Aev08g1468 | 580 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 183 | 473 | IPR027417 | - | |
| Aev08g1468 | 580 | Coils | Coil | 561 | 580 | - | - | |
| Aev08g1468 | 580 | CDD | SF2_C_DEAD | 332 | 462 | - | - | |
| Aev08g1468 | 580 | PANTHER | RNA HELICASE | 60 | 558 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev08g1468 | Aev-Chr8 | 10261693 | 10267343 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev08g1468 | 94 | 471 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 26.649 | 5.60e-45 | 162 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev08g1468 | K13179 | - | gmx:100798290 | 883.248 |