Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1449 ATGAAAAGCCTATCTCTTCCTCCTCTTAACGTCAAAGCAGCATCCTCACACCGAAATTCAGAACCATTCTTCACCATCCCACAACTCCGCAGAGCCATCACCACTCTCGACCTCGCGCGTGCCCCCCACACCCACACCCACTTCCTCCTCAAAGCATGCATCAGGTCCCGCCACTTCGACCTCGGCAAGCTCCTCCACCGCAAACTCGCCGATTCACAACCACAACTCGTCCTCGACTCGCTCCTCCTCAACTCACTCATCACCCTCTACTCCAAATGCGGCGACTGGCAACACGCGCTCTCAATCTTCAACACCATGCCAAACGATACAAAGGACCTGGTCTCGTGGACTGCCCTGATCTCCTGCTTCGCCAACCACGGAATGCACCGCGAAGCACTCGTCACGTTCCTCGACATGCTCCGAAACGGTTTCCACCCGAATGAGTACTGCTTTACGGCGTCGTTTCGAGCCTGTTCGAATCCTCTGTTTTTTCGAACTGGGCTTCAGATTTTCGGGTTCGTTTTGAAGACTGGGTACTTAGATTCTCATGTTTCCGTTGGTTGCGCGTTGATCGATCTGTTCGTTAAAGGCGGTGGCGGTGACGTTGATTCGGCCTTCAAGGTGTTCGAGAAAATGCGTGAGAGGAACGTGGTGACGTGGAACTTGATGATCACGAGGTTTTCGCAGCGTGGTTTCAACTGTGATGCGATTGAGTTGTTTCTGAGAATGTTGATGAGTGGGTTTGATCCTGATAGGTTCACCCTGAATGGTGTCATATCAGCGTGTGCTGCTGAGATGGAATTTTTGTCGTTTGGGAAGCAATTGCATTCTTTGGTTATTAGATCAGGAATGGGTTCGGATTTGTGCCTAGGTTCTAGTTTGGTGGACATGTATGCAAAATGTGATGTGGATGGATCAGTCGAAAATGCTAGGAAGGTGTTTGATAGAATGCCGGAGAGAAATGTTGTTTCTTGGACTGCACTCATTGCGGCGTATGTGGAAAGCAGTGGACAAGAATGGGAAGAAGCTATTGGAATGTTCTGTGACATGATGATTCAGGGCGATGTTGCGCCGAATTGTTTCACTTTCGCCGCCGTCCTCAAGGCTTGCACGCATCTTCCTGATTCTCGATTCAGTGAACAGATTCATTGTCAAACGGTTAAGCTAGGCGTTTCTGCTGTTGATTGTATAGGGAACTCTCTTGTTAATGTGTATGTAAGGTCTGGGAGGATGGAGTGCGCACGCAAGTATTTTGATTCTCTGTTTGAGCAGAACTTGGTTATAGGCAAAGCAGTTGTTGATCCTAATGCGAGAGTCTTGGATTCTGTTGATGGAATCGAAGGCGGCCCGACAGGTATTGGAGTGAGTTCTTATACATTTGCATGCCTGTTAAGTGGCGCTGCTTGTATTGGTACGATTGGTAAGGGTGAACAGATCCATAACATGGTGGTGAAATCTGGGTTTTGGAATGACCTATGTGTTAATAATGCTTTGATCTCTATGTATTCCAAGTGTGGGAACAAAGAAGCTGCTTTACAAGTCTTTAATGGTATCCGGGATCGAAATGTCATATCTTGGACCTCGATCATAAATGGTTTTGCGAAACACGGATTCGCGACAAAAGCATTAGAATTGTTCTATGAAATGCTTGATACAGGTGTTAAGCCTAATGAGGTCACTTACATTGCAGTTTTATCGGCATGTAGTCATGTTGGTTTGATTGATGAGGCTTGGAAGCACTTCGATTCCATGCGGCGCGACCATGGTATTGTTCCAAGGATGGAACATTATGCCTGTATGGTTGATTTGCTCGGTCGATCTGGTTTGCTTTCAGAAGCCATTGAATTCATTAACTCGATGCCTTTCCATGCTGATGCGCTGGTGTGGCGTGCATTTCTTGGTTCTTGCCGGATTCATCGCAATACTGAGCTCGGAGAGCACGCTGCGAAAATGATTCTTGAGCTGGAACCTCATGATCCTGCGGCCAATGTATTGTTGTCAAACCTGTATGCATCAGAAGGGCGATGGGACGATGTAGCAGCCATTAGGAAGAGTATGAAACAGAAAAAAATAATAAAAGAAAGAGGTTATAGCTGGATTGAAGTTGAAAAGCAGGTGCACAAATTCCATGTTGGTGATACTTCACACCCTCATGCTCAGAAGATTTATGATAAACTTGGTGAATTGGCTATAAAGATAAAGAACTTGGGTTATGTCCCAAATACAGATTTTGTTCTTCATGATGTGGAGGATGAACAGAAGGAACATTTTCTGTTTCAACACAGTGAGAAAATTGCTGTGGCATTTGCCTTAATTAGTACCCAAAAACCAAAACCTATTAGAGTATTTAAGAATCTGCGGGTTTGTGGGGACTGCCACGTGGCAATAAAGTATATATCAATGGTAACTGGAAGAGAGATTGTGCTGAGGGATGCAAACAGGTTTCATCATATCAAAGATGGGACATGCTCTTGCAATGATTATTGGTAA 2490 0.4562 MKSLSLPPLNVKAASSHRNSEPFFTIPQLRRAITTLDLARAPHTHTHFLLKACIRSRHFDLGKLLHRKLADSQPQLVLDSLLLNSLITLYSKCGDWQHALSIFNTMPNDTKDLVSWTALISCFANHGMHREALVTFLDMLRNGFHPNEYCFTASFRACSNPLFFRTGLQIFGFVLKTGYLDSHVSVGCALIDLFVKGGGGDVDSAFKVFEKMRERNVVTWNLMITRFSQRGFNCDAIELFLRMLMSGFDPDRFTLNGVISACAAEMEFLSFGKQLHSLVIRSGMGSDLCLGSSLVDMYAKCDVDGSVENARKVFDRMPERNVVSWTALIAAYVESSGQEWEEAIGMFCDMMIQGDVAPNCFTFAAVLKACTHLPDSRFSEQIHCQTVKLGVSAVDCIGNSLVNVYVRSGRMECARKYFDSLFEQNLVIGKAVVDPNARVLDSVDGIEGGPTGIGVSSYTFACLLSGAACIGTIGKGEQIHNMVVKSGFWNDLCVNNALISMYSKCGNKEAALQVFNGIRDRNVISWTSIINGFAKHGFATKALELFYEMLDTGVKPNEVTYIAVLSACSHVGLIDEAWKHFDSMRRDHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFHADALVWRAFLGSCRIHRNTELGEHAAKMILELEPHDPAANVLLSNLYASEGRWDDVAAIRKSMKQKKIIKERGYSWIEVEKQVHKFHVGDTSHPHAQKIYDKLGELAIKIKNLGYVPNTDFVLHDVEDEQKEHFLFQHSEKIAVAFALISTQKPKPIRVFKNLRVCGDCHVAIKYISMVTGREIVLRDANRFHHIKDGTCSCNDYW* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1449 829 Pfam PPR repeat 399 423 IPR002885 -
Aev08g1449 829 Pfam PPR repeat 84 107 IPR002885 -
Aev08g1449 829 Pfam PPR repeat 597 620 IPR002885 -
Aev08g1449 829 Pfam DYW family of nucleic acid deaminases 737 829 IPR032867 GO:0008270
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 557 592 IPR002885 -
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Aev08g1449 829 Gene3D Tetratricopeptide repeat domain 567 699 IPR011990 GO:0005515
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Aev08g1449 829 Pfam E+ motif 706 729 IPR046849 -
Aev08g1449 829 TIGRFAM PPR: pentatricopeptide repeat domain 524 558 IPR002885 -
Aev08g1449 829 TIGRFAM PPR: pentatricopeptide repeat domain 114 148 IPR002885 -
Aev08g1449 829 TIGRFAM PPR: pentatricopeptide repeat domain 559 592 IPR002885 -
Aev08g1449 829 Pfam E motif 639 701 IPR046848 -
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 321 358 IPR002885 -
Aev08g1449 829 PANTHER - 305 785 - -
Aev08g1449 829 PANTHER - 46 427 - -
Aev08g1449 829 Pfam PPR repeat family 521 569 IPR002885 -
Aev08g1449 829 Pfam PPR repeat family 215 263 IPR002885 -
Aev08g1449 829 Pfam PPR repeat family 320 370 IPR002885 -
Aev08g1449 829 Pfam PPR repeat family 111 159 IPR002885 -
Aev08g1449 829 PANTHER - 305 785 - -
Aev08g1449 829 PANTHER - 46 427 - -
Aev08g1449 829 Gene3D Tetratricopeptide repeat domain 25 163 IPR011990 GO:0005515
Aev08g1449 829 Gene3D Tetratricopeptide repeat domain 164 267 IPR011990 GO:0005515
Aev08g1449 829 Gene3D Tetratricopeptide repeat domain 449 566 IPR011990 GO:0005515
Aev08g1449 829 Gene3D Tetratricopeptide repeat domain 268 444 IPR011990 GO:0005515
Aev08g1449 829 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 146 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1449 Aev-Chr8 10103628 10106117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1449 29 829 Glycoside Hydrolase AT3G49170 55.134 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1449 - - cam:101509922 1138.25