Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1375 ATGGAAAACCACATCTACAGTTATAGCCCTACCAACTACAGACTATCATCAGCACGAGGCGCATCCTCCTCCGATACCATGTTCTTCTCTCACCATCGCTTCCCCTCTTCTTCCGACGCCGACATTGCCCCTCCTGGGGTTTCCGCCGTTGCCCCCACCTCCTCTTCTTCTGCCGCCCATTTTCTCTCTCACGCCTCCTCTTGGCCTGCCGCCGCCGCCGCCTTCGCCGCCGCCGTTAATGCCGGCTCTGCTGCTCTCGACCTCAAACGCTCTTCCGAAACACTCTACCATCCAACCATTTTTGGTATCAAAAACACAATTGGGCAAAGCGAAGCTTGGTATTCTACAAGCTCACTAGCCAAGCGTCCTAGGTACGAAAGTGGAAGCAATTTGCCCATATATCCACAGAGGCCAGGAGAAAAGGATTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATACGTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAGATTGGAAAGAGGTTCCAATTGTTGCTACAACTGAAACTCCTCCTGAGAGACCAGGAGAACCAGACTGTCCATACTTCCTTAAAACCCAGAGATGCAAGTTTGGTTCAAGGTGCAAGTTTAACCATCCAAAGGTTTCCTCTGAAAATGCTGATGTTCCTGCCTTACCTGAGAGGCCATCAGAGCCCCTATGTGCGTTCTATGTGAAGACTGGAAAGTGTAAATTTGGCGCCACATGTAAATTCCATCACCCAAAAGACATTCAGATTCAGATGTCTGATGAAATGTGTCACACTGCTGAACAGACAAGAGCAACTTCCATGATGGAGGGAGCTACAGCTGAGACACAACCAATTACGACTGTAATATCTCCACTTTTGCACAATAGCAAAGGGCTGCCATTAAGACTGGGAGAAGTAGATTGCCCATTCTACATGAAAACTGGAAGTTGCAAGTATGGTGCCACTTGCCGCTATAATCATCCTGACAGGAATGCAATTAATCCAGCTATTGCTGCATTAGGTCCCTCTTTTTTGACATCTGCAGCTGCTAATCTGGGTATTGGAGTTATGAATCCAGCTATACCTGTTTATCAAACGTTTGACTCAAGGTTGTCAAATCCAATGGTGGGAATGGGAGAAGTTATCTATCCTCAGCGTCCCGGAGAGATTGAATGTGATTTTTATATGAAAACTGGGGTGTGTAAATTTGGGGAAAGCTGCAAGTTTCATCATCCTATTGACCGCTCAGCACAATCACAACAAACTGTCAAGCTCACTCCTGCAGGATTACCTAGGAGAGAGGGCTCTGTCGTCTGTCCGTATTATTTGAAAACTGGCACCTGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACAACAACAGGGAACACCTGCAGCTAATGGAGAGGAGACAACAGGCCTTCAAAATGAAAAGAAACAGCAGTGA 1464 0.472 MENHIYSYSPTNYRLSSARGASSSDTMFFSHHRFPSSSDADIAPPGVSAVAPTSSSSAAHFLSHASSWPAAAAAFAAAVNAGSAALDLKRSSETLYHPTIFGIKNTIGQSEAWYSTSSLAKRPRYESGSNLPIYPQRPGEKDCAHYMLTRTCKFGDTCKFDHPIWVPEGGIPDWKEVPIVATTETPPERPGEPDCPYFLKTQRCKFGSRCKFNHPKVSSENADVPALPERPSEPLCAFYVKTGKCKFGATCKFHHPKDIQIQMSDEMCHTAEQTRATSMMEGATAETQPITTVISPLLHNSKGLPLRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPAIAALGPSFLTSAAANLGIGVMNPAIPVYQTFDSRLSNPMVGMGEVIYPQRPGEIECDFYMKTGVCKFGESCKFHHPIDRSAQSQQTVKLTPAGLPRREGSVVCPYYLKTGTCKFGATCKFDHPQQQGTPAANGEETTGLQNEKKQQ* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1375 487 MobiDBLite consensus disorder prediction 464 481 - -
Aev08g1375 487 SMART c3hfinal6 438 465 IPR000571 GO:0046872
Aev08g1375 487 SMART c3hfinal6 230 257 IPR000571 GO:0046872
Aev08g1375 487 SMART c3hfinal6 307 334 IPR000571 GO:0046872
Aev08g1375 487 SMART c3hfinal6 391 418 IPR000571 GO:0046872
Aev08g1375 487 SMART c3hfinal6 189 216 IPR000571 GO:0046872
Aev08g1375 487 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 307 335 IPR000571 GO:0046872
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 391 419 IPR000571 GO:0046872
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 393 419 IPR036855 GO:0046872
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 189 217 IPR000571 GO:0046872
Aev08g1375 487 MobiDBLite consensus disorder prediction 464 487 - -
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 311 334 IPR036855 GO:0046872
Aev08g1375 487 Gene3D - 390 475 - -
Aev08g1375 487 Gene3D - 136 228 - -
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 216 IPR000571 GO:0046872
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 417 IPR000571 GO:0046872
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 233 257 IPR000571 GO:0046872
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 441 465 IPR000571 GO:0046872
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 310 333 IPR000571 GO:0046872
Aev08g1375 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 163 IPR000571 GO:0046872
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 438 466 IPR000571 GO:0046872
Aev08g1375 487 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 59 472 - -
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 233 258 IPR036855 GO:0046872
Aev08g1375 487 PANTHER CCCH ZINC FINGER/TIS11-RELATED 59 472 IPR045877 GO:0003729
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Aev08g1375 487 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 194 215 IPR036855 GO:0046872
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 441 466 IPR036855 GO:0046872
Aev08g1375 487 SUPERFAMILY CCCH zinc finger 138 164 IPR036855 GO:0046872
Aev08g1375 487 Gene3D - 229 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1375 Aev-Chr8 9085544 9102313 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1375 118 477 C2H2 Transcription Factor Family AT3G02830 35.279 1.99e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev08g1375 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1375 - - gmx:100793976 704.901