Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1330 ATGGATGACCCCACATTCCTCAGCGACTTACCTCCCCTCAAGAGGCTCAGATTACAACACCAACAACAACAACAACAGATCACTGCCTACTCTTCTCCCCTCCCTACAAAGAAGCGCAAGGAACCTCGAAACGCAGCGTTTCACCCAAACCCACCGCCATCACCTCCTTCTCATTCTCATGCCACTGTATATTCTCTTCCTGCCAAGAAAAGAATTTGCGCCCTCCAACCCCACTTCCCTCCGAACGACGCCGTTTCCCCCTTCGACCTCAACGTTCAATACAACCCCTTTCTCGAATCTCCTCAGAAGCCCCAAATTTCAACCGAATCTCCCCAAAAGCACGTTGAAGAAGAAGGTAATGATGATGATGATGATGACGATGGAATCTTATGCTGCGTGTGCCAGAGCGCAGACGGTGACCCTACGGACCCAATCGTTCTGTGCGATGGGTGCGACCTCATGGTGCACGCTTCCTGCTACGGGAACCCGCTATCAAAGGGAGTCCCAGAAGGTGACTGGTTCTGCGAACGGTGTCGTTTCGACAAGGGTTCGGGTTCGGGTTGCTGCTGCCTCTGCCCAGTGAAGGAAGGTGCGGTGAAGAGGACAACGGAGAATCGTTGGGCCCACATCTTGTGCGCGTTGTTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGGGAAGGGATCGATTGCTCCATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGTTATCTGTGCGGTGCTGATGGCTGCGCTATCGTCTGCTCTGAGCCTAAGTGCTGTTTGGCGTTTCATGTTACTTGTGGGATCAAAGAGGATCTCTGCATTGAGTATAAGCAAGGGAACAGGGCTAAGGCTTCTACCATTGTTGCTGGCTTCTGCAAAACACACTCTCAGCTATGGGAAAAGTTTCAGCAATCAGGAAAATACAAAATTGTTGCCATTAAAGAAGATAAAGAGTAG 966 0.5124 MDDPTFLSDLPPLKRLRLQHQQQQQQITAYSSPLPTKKRKEPRNAAFHPNPPPSPPSHSHATVYSLPAKKRICALQPHFPPNDAVSPFDLNVQYNPFLESPQKPQISTESPQKHVEEEGNDDDDDDDGILCCVCQSADGDPTDPIVLCDGCDLMVHASCYGNPLSKGVPEGDWFCERCRFDKGSGSGCCCLCPVKEGAVKRTTENRWAHILCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYLCGADGCAIVCSEPKCCLAFHVTCGIKEDLCIEYKQGNRAKASTIVAGFCKTHSQLWEKFQQSGKYKIVAIKEDKE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1330 321 MobiDBLite consensus disorder prediction 18 33 - -
Aev08g1330 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 301 IPR013083 -
Aev08g1330 321 MobiDBLite consensus disorder prediction 99 124 - -
Aev08g1330 321 MobiDBLite consensus disorder prediction 18 62 - -
Aev08g1330 321 SUPERFAMILY FYVE/PHD zinc finger 116 188 IPR011011 -
Aev08g1330 321 ProSiteProfiles Extended PHD (ePHD) domain profile. 186 299 IPR034732 -
Aev08g1330 321 SMART PHD_3 243 299 IPR001965 -
Aev08g1330 321 SMART PHD_3 130 179 IPR001965 -
Aev08g1330 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 185 IPR013083 -
Aev08g1330 321 ProSiteProfiles Zinc finger PHD-type profile. 128 181 IPR019787 -
Aev08g1330 321 CDD PHD_BRPF_JADE_like 130 178 - -
Aev08g1330 321 Pfam PHD-finger 131 180 IPR019787 -
Aev08g1330 321 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 105 307 - -
Aev08g1330 321 ProSitePatterns Zinc finger PHD-type signature. 131 178 IPR019786 -
Aev08g1330 321 Pfam PHD-zinc-finger like domain 189 296 - -
Aev08g1330 321 PANTHER PHD FINGER PROTEINS 105 307 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1330 19 321 C2H2 Transcription Factor Family AT3G14740 51.534 2.01e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev08g1330 zf-HC5HC2H_2 9.8e-24 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1330 K11380 - gmx:100786929 365.925