Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1306 ATGAACGCGCATTCATCCATTCGTGATCGCACGCATGAATTCCACAGCATTGCGGAGAGGTTGAAGAAATCTAAATCGGCCCCGAACGGGCCCAGTAGTAGCAGCAATTCTTCTTCTTCTTCTTCGAGATCGGAGGAACAGCGATCCGCCATTGCAATTCAGTCAGAGTTCAATCGCAGGGCCTCCAAGATTGGCTATGGAATCCACCAAACCTCCCAGAAACTCGCCAAGCTCGCCAAGTTGGCGAAGAGGACTTCGGTTTTCGATGACCCTGCCATGGAAATCCAAGAGCTCACGGGTGTTATAAAGCAAGACATTACTGCTTTGAACTCTGCGGTTGTGGATCTTCAGTTGCTCTCCAACTCCAGAAACGAGAATGGAAGTGTTTCTGCGGACACCACAAGCCATTCGACGACGGTTGTGGATGATCTCAAGACTCGATTGATGAGCACCACCAAAGAATTCAAAGATGTTCTCACCATGAGAACTGAGAATTTGAAAGTGCATGAGAATAGAAGGCAATTGTTTTCATCCTCTGGCTCTAAGGATTCTGCTAATCCTTTTGTTCGTCAACGGCCATTGGCAACGAGGACGGCTGCTAGTGCTTCTAATGCCCCCGCCACACCGTGGGCTAGTGGGTCGCCATCTTCGTCTGAGTTGCTTCCTAAGAAGCAGGTGGATGGGGAAAGTCAACCATTGCTGCAACAACAACAGCAGCAACAGCAACAGATGGTTCCATTGCAAGACAGTTATATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAATCCACGATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACTCTTGTTTCCCAACAAGGAGAGGTTGCCATAAGAATTGATGAAAACATGGAGGATACACTGGCAAATGTTGAGGGAGCACAAGGGGCTCTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTGATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAA 1026 0.462 MNAHSSIRDRTHEFHSIAERLKKSKSAPNGPSSSSNSSSSSSRSEEQRSAIAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPAMEIQELTGVIKQDITALNSAVVDLQLLSNSRNENGSVSADTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSGSKDSANPFVRQRPLATRTAASASNAPATPWASGSPSSSELLPKKQVDGESQPLLQQQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMEDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1306 341 ProSitePatterns Syntaxin / epimorphin family signature. 255 294 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aev08g1306 341 MobiDBLite consensus disorder prediction 26 49 - -
Aev08g1306 341 CDD SNARE_syntaxin5 252 330 - -
Aev08g1306 341 PANTHER SYNTAXIN 6 340 IPR045242 -
Aev08g1306 341 Pfam SNARE domain 286 337 IPR000727 -
Aev08g1306 341 MobiDBLite consensus disorder prediction 196 247 - -
Aev08g1306 341 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 249 311 IPR000727 -
Aev08g1306 341 PANTHER SYNTAXIN-32-LIKE 6 340 - -
Aev08g1306 341 Gene3D - 52 304 - -
Aev08g1306 341 SUPERFAMILY t-snare proteins 55 304 IPR010989 GO:0016020|GO:0016192
Aev08g1306 341 MobiDBLite consensus disorder prediction 1 22 - -
Aev08g1306 341 MobiDBLite consensus disorder prediction 1 49 - -
Aev08g1306 341 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 3 23 IPR021538 -
Aev08g1306 341 SMART tSNARE_6 244 311 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1306 Aev-Chr8 8230378 8232385 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1306 2 341 SNARE and Associated Proteins AT3G24350 64.820 1.70e-143 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1306 K08490 - gmx:100777961 464.536