Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1267 ATGACTCGCGTTTATGTTGGCAATCTTGATTCGCGTGTTACTGAGAGAGATCTTGAGGATGAATTCCATGTTTTTGGAGTCATACGCAGTGTGTGGGTTGCACGGAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAAGATGCTATTCGGGAGTTAGATGGCAAGAATGGATGGAGAGTAGAACTTTCTCACAACTCTAGAGGTGGAGGTGGAGGTGGAGGTGGTGGTGGTCGTGGTCGCTCTGGTGGTGGCGGCGGCTCTGATCTGAAATGTTACGAGTGTGGCGAACCTGGTCATTTTGCTCGGGAATGTCGTATGCGTGGCGGTTCTGGAAGACGTCGTAGCCGTAGTCCACCTCGATTCCGTAGGAGCCCAAGTTATGGTCGAAGGAGCTACAGTCCTCGTGGGCGAGGGTCCCCTAGGCGCCGTAGCTTGTCACCTCGTGGACGCAGTTATAGCAGGTCACCTCCTTACCGTGGGCGTGAGGAGCTAACATACGCTAATGGGTTCTCTTATGATGGAAAACAAAATCTTGAGCCTTCTTGGGAGAAGATAGATGCACGCAAGCACCATGAGATGCCATTTTCAGTATACAATTTTCAAAGTACTCTGAATCCTGAAGGCAGAACTAGTGGTAGTGGTGATTGTAGTAGGAATAGGATCAACATAAGAGTTCCCTCCCTTGGAAAATTTAAGGTTTTCCCAGAAAACCATCAGCTATGGAAGAAGAGAATTCTTGATCCTGGCAGTGATATCTTCTTGGAGTGGAACAGGGCTTTCCTCTGCTCTTGCATACTATCACTGTTTGTTGATCCCCTGTTTTTCTACCTACCCTCAGTGGCAAATGATGGGAATTCATCATGTATGGCTACCGACTTGAATATAGGAATCGTCGTGACATGTTTCCGAACATTTGCTGATGTTTTCTATCTGCTGAACATGATCATAAAGTTCAGAACAGCCTATGTGTCACCTAGCTCAAGGGTATTTGGAAGAGGTGAGCTTGTTATGGATCCGAGGTTGATCGCTAGACGGTATTTGAGATCAGAGTTTTTCCTGGATCTTGTAGCTACATTGCCTCTTCCTCAGATTGTGATATGGTTTATTATGCCAGCAATTAGAAGTTCCCATGCTGATCACACCAACAATGCTCTTGTGCTGATTGTTCTGCTTCAATATGTCCCCAGATTGTACTTGATCTTCCCATTAAGCTCTCAGATTATCAAAGCCACCGGTGTCGTTACGAAGACGGCTTGGGCTGGAGCTGCTTACAATCTTCTACTTTACATGTTAGCTAGTCATGTCTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAATCTTACCTACAAGATGTTTCCTTAAGTACTTGGATTGCAGTTCTTTGAACGATGATGATCGTGCGAAGTGGATGAACACTACTTCTGTGTTTGGAAACTGCAATCCAGAAAACAGCACCAGTTTCAACTATGGGATATTTGGAAATGCAGTTCAAAATAATGTTGTCTCTTCTACATTTATGGAGAAGTATCTCTATTGTCTATGGTGGGGTTTGCAGAACTTAAGTTCATATGGCCAGGGTTTGACAACAAGCACATTCGTTTGGGAAACTGCATTTGCAATTCTGATAGCTATTCTTGGTCTAGTTTTGTTTTCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAGTGGAGGCTTAAGAGACGGGACACTGAAGAATGGATGAAACATCGCCAGCTCCCACAACATCTCAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGCTTGCGACTCGAGGCGTTGACGGAGAGACAATCTTAAGAGGCCTGCCTACAGATCTCCGTAGAGACATCCAACGCCACCTTTGCTTGGACCTCGTTCGACGTGTACCCTTTTTTTCACAAATGGATGATCAGCTACTTGATGCAATATGTGAGAGATTGGTGTCATCATTGAGTACTCAAGGCACATACATAGTGAGGGAAGGAGACCCGGTTACCGAGATGCTTTTCATCATAAGAGGAAGACTCGAAAGCTCAACGACAAATGGAGGAAGAACTGGTTTCTTCAACTCTATTACCTTGAGGCCTGGCGATTTCTGCGGGGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGGACAGTTAGGGCCCTTGTGGAAGTTGAAGCCTTTGCACTTAGAGCAGAAGACCTTAAATTCGTGGCCAATCAGTTTCGACGCCTCCACAGCAAGAAGCTACAGCACACGTTCCGGTTCTACTCTTACCATTGGAGGACATGGGCTGCCTGCTTCATTCAGGCCGCGTGGCGCCGGTACAAGAAGAGGATGCTGGCTAAGAGCCTTAGCTTGAGGGAATGCCAGTCATTCAACGATGATGAACAAGTGGCGGATGATCAAACTGAAGAAGATCACAGTGCTGCAACTTCTAATACTACACAGGTGAAACAGAACCTTGGTGTGACTATACTGGCTTCAAGATTTGCTGCTAACACAAGGAGAGGGGCTCAGAAGATCAAGGATGTTGGTATGCCAAAGCTGCAAAAGCCTGAAGAGCCAGATTTCTCAGTAGAGACTGATGATTAG 2697 0.4579 MTRVYVGNLDSRVTERDLEDEFHVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGGGGRGRSGGGGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRGSPRRRSLSPRGRSYSRSPPYRGREELTYANGFSYDGKQNLEPSWEKIDARKHHEMPFSVYNFQSTLNPEGRTSGSGDCSRNRINIRVPSLGKFKVFPENHQLWKKRILDPGSDIFLEWNRAFLCSCILSLFVDPLFFYLPSVANDGNSSCMATDLNIGIVVTCFRTFADVFYLLNMIIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNEILPTRCFLKYLDCSSLNDDDRAKWMNTTSVFGNCNPENSTSFNYGIFGNAVQNNVVSSTFMEKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILIAILGLVLFSHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQHLRERVRRFVQYKWLATRGVDGETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVRALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRYKKRMLAKSLSLRECQSFNDDEQVADDQTEEDHSAATSNTTQVKQNLGVTILASRFAANTRRGAQKIKDVGMPKLQKPEEPDFSVETDD* 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1267 898 Gene3D - 290 586 - -
Aev08g1267 898 SUPERFAMILY RNA-binding domain, RBD 2 91 IPR035979 GO:0003676
Aev08g1267 898 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 223 895 - -
Aev08g1267 898 MobiDBLite consensus disorder prediction 872 898 - -
Aev08g1267 898 PRINTS EAG/ELK/ERG potassium channel family signature 623 630 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aev08g1267 898 PRINTS EAG/ELK/ERG potassium channel family signature 555 566 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aev08g1267 898 PRINTS EAG/ELK/ERG potassium channel family signature 320 329 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aev08g1267 898 PRINTS EAG/ELK/ERG potassium channel family signature 573 582 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aev08g1267 898 PRINTS EAG/ELK/ERG potassium channel family signature 529 546 IPR003938 GO:0005249|GO:0006813|GO:0016020
Aev08g1267 898 Gene3D Jelly Rolls 658 778 IPR014710 -
Aev08g1267 898 Pfam Cyclic nucleotide-binding domain 683 771 IPR000595 -
Aev08g1267 898 MobiDBLite consensus disorder prediction 66 91 - -
Aev08g1267 898 Gene3D Helix hairpin bin 588 651 - -
Aev08g1267 898 SUPERFAMILY Voltage-gated potassium channels 254 582 - -
Aev08g1267 898 SUPERFAMILY cAMP-binding domain-like 590 782 IPR018490 -
Aev08g1267 898 CDD CAP_ED 660 791 IPR000595 -
Aev08g1267 898 SMART cnmp_10 660 791 IPR000595 -
Aev08g1267 898 SMART rrm1_1 3 69 IPR000504 GO:0003723
Aev08g1267 898 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 223 895 - -
Aev08g1267 898 Gene3D - 97 140 - -
Aev08g1267 898 MobiDBLite consensus disorder prediction 108 166 - -
Aev08g1267 898 Gene3D - 1 96 IPR012677 -
Aev08g1267 898 ProSiteProfiles cAMP/cGMP binding motif profile. 660 743 IPR000595 -
Aev08g1267 898 Pfam Ion transport protein 262 587 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aev08g1267 898 ProSiteProfiles Zinc finger CCHC-type profile. 96 111 IPR001878 GO:0003676|GO:0008270
Aev08g1267 898 SUPERFAMILY Retrovirus zinc finger-like domains 89 112 IPR036875 GO:0003676|GO:0008270
Aev08g1267 898 SMART c2hcfinal6 96 112 IPR001878 GO:0003676|GO:0008270
Aev08g1267 898 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Aev08g1267 898 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Aev08g1267 898 CDD RRM_SRSF3_like 3 71 - -
Aev08g1267 898 Pfam Zinc knuckle 96 111 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1267 Aev-Chr8 7943030 7951112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1267 206 895 Ion Channels AT2G24610 72.103 0.0 1042
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1267 K05391 - gmx:100803334 1293.49