Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1264 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCACTCATGCAGCAAGCCTTGCTCCAGCAACAGCAGATGTACCACCCCGGCATGCTTGCAGCTGCCGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATCTCCCTCCTGGTTTTGACACCTCTGCATGCCGTAGTGTTTATGTAGGAAATATACATGTAAATGTCACCGATAAGCTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCACTTGCTGGGTGCAAGCTGATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCTTCCGCAGCCCTTGCAATAATGACTTTGCATGGACGGCAACTATATGGTCAAGCGCTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACTTCAGGGCACTACAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGATCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCGCAAAGTGCCATCAATGATATGACGGGCAAATGGCTGGGAAATAGGCAGATAAGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAGTGAGGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAGCAATGAGGATGCTCCTGAAAACAATCCTGCATACACAACTGTTTACGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAAGTCCATTGTCAGTTCCATGCTCTGGGGGCTGGGGTTATTGAGGAGGTTCGAATTCAGAGGGATAAAGGCTTTGGATTTGTCAGATACAACACTCATGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGAATAGTTCGTGGCAAGTCAATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGAACAGCTTCAAATCCACTACCCCCTCCAGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGTTACTCTCCTGCCGAGTTGTTGGCTTATCAGCGCCAACTGGCATTGAGTCAAGCTGCTGTATCCGGCCTTTCAGGTCAAGCTCTTCTGCAAATGTCTGGACAGCATGGCCTTGCTCCTGCTTCTATGGGCATAAACTCCGGGGCGTCTCAAGCCATGTACGACGGGTACACTGGCAACTCATCCAGACAGCAGCTTATGTACTACCGTTGA 1308 0.4732 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHYNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSSEEKNNDNQNAVVLTNGSSDGGQDNSNEDAPENNPAYTTVYVGNLPHDVTQAEVHCQFHALGAGVIEEVRIQRDKGFGFVRYNTHEEAALAIQMANGRIVRGKSMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1264 435 Gene3D - 1 139 IPR012677 -
Aev08g1264 435 SUPERFAMILY RNA-binding domain, RBD 135 244 IPR035979 GO:0003676
Aev08g1264 435 SUPERFAMILY RNA-binding domain, RBD 41 134 IPR035979 GO:0003676
Aev08g1264 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Aev08g1264 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Aev08g1264 435 Gene3D - 241 341 IPR012677 -
Aev08g1264 435 CDD RRM2_PUB1 142 216 - -
Aev08g1264 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 432 - -
Aev08g1264 435 SUPERFAMILY RNA-binding domain, RBD 253 346 IPR035979 GO:0003676
Aev08g1264 435 CDD RRM3_TIA1_like 263 337 - -
Aev08g1264 435 SMART rrm1_1 264 333 IPR000504 GO:0003723
Aev08g1264 435 SMART rrm1_1 142 215 IPR000504 GO:0003723
Aev08g1264 435 SMART rrm1_1 57 126 IPR000504 GO:0003723
Aev08g1264 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Aev08g1264 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Aev08g1264 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Aev08g1264 435 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 8 432 - -
Aev08g1264 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Aev08g1264 435 Gene3D - 140 240 IPR012677 -
Aev08g1264 435 MobiDBLite consensus disorder prediction 218 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1264 Aev-Chr8 7922334 7927731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1264 57 337 Eukaryotic Initiation Factors Gene Family AT2G23350 28.425 2.65e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1264 K13201 - gmx:100777108 837.025