Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1130 ATGGGGAGAGGGAAGATTGTGATAAGGAGGATCGATAACTCGACGAGCAGACAGGTGACGTTCTCGAAGCGAAGGAGCGGTTTGCTGAAGAAGGCGAAGGAGCTTTCGATCCTGTGCGATGCTGAGGTTGGAGTTATGATCTTCTCAAGCACTGGAAAACTCTACGATTACGCCAGCACCAGTATGAAATCAGTAATCGATCGATACAACAAAACAAAAGAGGAGCAGAATCCACTGGGTAGTTCAACCTCTGAAATCAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGAAAGTCACCGGCAAATGATGGGAGAAGAGCTGTCAGGTTTAACTGTCAAAGAATTACAGAGTTTGGAGAACCAACTGGAAATTAGCCTCCACGGTGTCCGTGCAAAAAAGGAACAACTTTTCATGGACGAAATACAGGAACTAAATCAAAAGGGAAACCTGATGCACCAAGAAAATATGGAACTGTATAAGAAGGTAAACCTAATTCGTCAAGAAAACATGGAATTGAAGAAAAAGGTCTACGGAACAAGAGATGGGAATGGATCAGACAGAAATTCTGTTCTCACAAATGGTCTAAGCATTGGAGATGATTTGCAGGTTCCCGTGAATCTCCAGCTAAGCCAACCACAGCAACAAAACTATGAGGCACCTTCAGGAGTTACAAAATTGGGTTTCTCAGCAACCAAACGGATTCACAAACTGAAAAAACTTGCGGCCGTTCTAGCTGGAAAGGAGATCAACGGAAACGAGTTCGCGAACGCGATTCGGACGAAACGCGGAATCTCTCTCACCGTTAAGCGGCGGAGAATCGGAATCCATGGACGAATCGGAGAAAGCGATGAAACGAAGCGTGGAAGAGAGAAAGAGAGATCTGGTTCAGAGAATTCTCACGCGAAAATAGCGAATCAAATGGAGGGAGAGAAAGAGAATAATGAAGTAAACAACAGGGAATCGGATAAGCAAGCCAAGCAGCACCAGGCAGGTCCTGCCACATTCGTTTTCCTTCTCCTCCAGAAACCTAATTCCTCTCATCATCTTCCACTTTTGGAACCCTCACCTTACAGGGTAACCCATTTCAAAGCGATGGATTTGGTAGCATCAAACGAAAAGTTATACTCTTTCCACCACTTCCACAGAGCCTCCAGCTTCAGAGGTAAAGTTCATGACAACGCTGTTTCTCGCCCCTTTATTCTATCAGCTGATAGCTCCATTCACTTCACGAAACTGAAGCGCATTATTAATATTAACTCCAGAAAAAAGCATTCTGAAAACCGCGTTTTCGCGGTCTCGAAGTTCGAAACCTCTGGCCTGAACGGTAAGCTTCAGCATTTCGGAAGAAACCCCACAAACGGGGACTCCAACAACGGAATAGCGGAACCGTCGCCAAATGGTTACAACAATGGTTCTTCTAGAAACTTCGAGGAGTTCGAGAGTAACCACCATCTTAGGAAGCTGGTGAGGAACGGTGAATTGGAAGAAGGGTTTAGGTTCTTAGAGCGAATGACATGTCAAGGGGACATTCCTGATGTAATTGCTTGCACCACTTTGATCCGAGGGTTCTGCCGTGCCGGCAGGACCAAGAAGGCGACGCGAATCCTCGATATCCTCGAGAATTCCGGCGCCGTTCCTGATGTCATAACTTATAATGTTTTGATTAGTGGTTACTGCAAATCAGGGGAGATAGATAAGGCTTTGCAGGTGTTGGAACGCATGAGTGTTGCCCCTGATGTTGTTACTTATAACACTATACTGCGTAGTTTGTGTGATAGTGGGAAATTGAAGCTTGCAATGGAAGTTCTTGATAGGCAATTGCAGAGGGAGTGTTACCCTGATGTGATAACTTACACTATATTGATTGAAGCTACTTGTAAAGAGAGTGGTGTTGGTCATGCGATGAAGCTATTGGATGCTATGAGGAACAAAGGGTGTAAACCCGATGTTGTTACTTTCAATGTTCTTATCAATGGGATTTGCAAGGAAGGGAGGTTGGATGAGGCGATTAAGTTCTTGGATAAAATGCCAGCATATGGTTGTGAACCTAATGTGATCACGCATAATATTATTCTGCGTAGCATGTGCAGCACCGGGAGGTGGATGGACGCGGAGAGGCTTTTATCGGACATGCTTCGCAAGGGGTGTGCCCCTAGTGTTGTCACTTTCAATATCTTGATTAACTTTTTGTGCCGGAAAGGGCTGTTGGGTAGAGCCATCGATATATTGGAGAAGATGCCGAAGCATGGTTGCATACCGAATTCCTTGAGCTACAATCCATTGCTTCATGGGTTCTGTAAAGAGAAGAAGATGGATAGAGCTATTCAGTACTTGGAGTTAATGGTGTCGAGGGGTTGTTACCCTGATATAGTGACCTATAATACTTTGCTCACAGCATTGTGCAAAGATGGGAAGGTGGATGTTGCGGTTGAGATACTGAATCAACTAAGTTATAAGGGGTGCTCCCCTGTTTTAATTACTTATAATACGGTTATCGATGGGCTTTCGAAGGCGGGGAAAACAGACACTGCTGTGGGACTCTTGGAGGAGATGTATAAAAAGGGTCTTAAGCCCGATATAATTACTTACTCTTCACTGCTCGGGGGCCTCAGTCGCGAGGGGAAGGTTGATGCGGCTATCAAGTTTTTCCATGACTTGGAGAGATTAGGTATTAGGCCTAATGCTATCACTTACAACTCAGTCATTTTGGGACTCTGCAAGGCTCAACAGACTAGTCGCGCAATCGATTTTCTGTCTTATATGATAGAGAAAGGATGTAAACCAACGGAAGCTTCTTATACCATTCTAATAGAAGGCATTGCTTATGAAGGATTAGCTGAGGAAGCTTTGGAGTTGTTGAATGAGTTGTGCTCCAGAGGATTTGTGAAGAAAAGTTCAGCTGAAAAGCTCAAGCTTCCATGGACTAAGCGTAACAACGGCACTTACAAATCCCTTGGCGGGTTCAGGTACGATCCTTTAAGCTATGCTCAGAACTTTGATGAAGGTAATTGGCTCGATGATGACGAAGAATCTTTGCGACGCGGGTTCTCTGCTAGATATGTAGCTCCTTCTTCGGTTATTAAATCGCTCAAGCAATGA 3123 0.446 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKAKELSILCDAEVGVMIFSSTGKLYDYASTSMKSVIDRYNKTKEEQNPLGSSTSEIKFWQREAAMLRQQLQNLQESHRQMMGEELSGLTVKELQSLENQLEISLHGVRAKKEQLFMDEIQELNQKGNLMHQENMELYKKVNLIRQENMELKKKVYGTRDGNGSDRNSVLTNGLSIGDDLQVPVNLQLSQPQQQNYEAPSGVTKLGFSATKRIHKLKKLAAVLAGKEINGNEFANAIRTKRGISLTVKRRRIGIHGRIGESDETKRGREKERSGSENSHAKIANQMEGEKENNEVNNRESDKQAKQHQAGPATFVFLLLQKPNSSHHLPLLEPSPYRVTHFKAMDLVASNEKLYSFHHFHRASSFRGKVHDNAVSRPFILSADSSIHFTKLKRIININSRKKHSENRVFAVSKFETSGLNGKLQHFGRNPTNGDSNNGIAEPSPNGYNNGSSRNFEEFESNHHLRKLVRNGELEEGFRFLERMTCQGDIPDVIACTTLIRGFCRAGRTKKATRILDILENSGAVPDVITYNVLISGYCKSGEIDKALQVLERMSVAPDVVTYNTILRSLCDSGKLKLAMEVLDRQLQRECYPDVITYTILIEATCKESGVGHAMKLLDAMRNKGCKPDVVTFNVLINGICKEGRLDEAIKFLDKMPAYGCEPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCAPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCIPNSLSYNPLLHGFCKEKKMDRAIQYLELMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSYKGCSPVLITYNTVIDGLSKAGKTDTAVGLLEEMYKKGLKPDIITYSSLLGGLSREGKVDAAIKFFHDLERLGIRPNAITYNSVILGLCKAQQTSRAIDFLSYMIEKGCKPTEASYTILIEGIAYEGLAEEALELLNELCSRGFVKKSSAEKLKLPWTKRNNGTYKSLGGFRYDPLSYAQNFDEGNWLDDDEESLRRGFSARYVAPSSVIKSLKQ* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 867 901 IPR002885 -
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 472 614 IPR011990 GO:0005515
Aev08g1130 1040 MobiDBLite consensus disorder prediction 451 483 - -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 727 761 IPR002885 -
Aev08g1130 1040 PANTHER OS02G0565400 PROTEIN 418 978 - -
Aev08g1130 1040 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 940 970 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 729 762 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 589 623 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 659 693 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 904 938 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 799 831 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 834 868 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 624 658 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 694 727 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 523 556 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 765 798 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 557 583 IPR002885 -
Aev08g1130 1040 TIGRFAM PPR: pentatricopeptide repeat domain 869 903 IPR002885 -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 797 831 IPR002885 -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 692 726 IPR002885 -
Aev08g1130 1040 MobiDBLite consensus disorder prediction 285 334 - -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 657 691 IPR002885 -
Aev08g1130 1040 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 937 971 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat 722 754 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat 551 583 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat 519 545 IPR002885 -
Aev08g1130 1040 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 587 621 IPR002885 -
Aev08g1130 1040 PANTHER ATPASE EXPRESSION PROTEIN 3 418 978 - -
Aev08g1130 1040 Pfam PPR repeat family 834 879 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat family 901 948 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat family 761 810 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat family 586 635 IPR002885 -
Aev08g1130 1040 Pfam PPR repeat family 656 705 IPR002885 -
Aev08g1130 1040 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 896 966 IPR011990 GO:0005515
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 755 825 IPR011990 GO:0005515
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 826 895 IPR011990 GO:0005515
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 686 754 IPR011990 GO:0005515
Aev08g1130 1040 Gene3D Tetratricopeptide repeat domain 615 685 IPR011990 GO:0005515
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 622 656 IPR002885 -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 832 866 IPR002885 -
Aev08g1130 1040 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev08g1130 1040 Coils Coil 163 183 - -
Aev08g1130 1040 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 902 936 IPR002885 -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 520 554 IPR002885 -
Aev08g1130 1040 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 762 796 IPR002885 -
Aev08g1130 1040 Coils Coil 86 113 - -
Aev08g1130 1040 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 585 IPR002885 -
Aev08g1130 1040 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Aev08g1130 1040 SUPERFAMILY HCP-like 734 866 - -
Aev08g1130 1040 MobiDBLite consensus disorder prediction 285 336 - -
Aev08g1130 1040 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev08g1130 1040 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1130 Aev-Chr8 6940709 6961411 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1130 1 228 MADS-box Gene Family AT4G37940 59.649 8.37e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev08g1130 K-box 1.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1130 - - gmx:100791459 949.503