Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1126 ATGATTCAGGTGATAATGGATAATGGAATAGTTCAGGTCAATATATCAAATCCTGAAGGAATGGTCATAGGAATTCAGTATAATGGGATGGACAATTTGCTTGAAGTTATCAACGAAGAATCTGACAGAGGGTACTGGGATATGGTGTGGGACGATGGTACAAACATAGGCCCAACAAAGGAGAGAAAAAAGAGAAAAAAGGGTCAATTTGACAGGATGGAAGCCACAAATATGACAGTGATTGTGGAAACTGAAGAACAAGTAGAGCTATCATTCACCAGAATGTGGGATTCCTCTATGGAGGGAGATTACCCTCCACTCAATATTGATAAAAGGTTTATTATGCTTCGTGGTTCATCTGGGTTCTACACCTATGCAATTTACGAACGTTTGAAGGAATGGCCTGGATTCAATCTATCCAACACTAGGGTTGCTTTTAAGCTCAGAAAAGACAAGTTTCAGTACATGGCGGTAGCAGATAATAGGCAAAGATTTATGCCTCTGCCTGATGACCGGGAAAACGGAAGAGGCCAAGCTCTGGCTTACCCTGAAGCTGTCTTGCTTGTTAATCCCGTGGAGCCCCAGTTCAGAGGAGAGGTGGACGACAAATACCAGTATTCATGCGAGAGTAGGAACAACCGAGTTCACGGTTGGATATCCTTGGACGAACCATCCCATTCCCAATCCACTGGCTTCTGGCTCATCACTCCAAGCTTTGAGTTCCGAAATGGTGGGCCCCTCAAGCAATACCTTGCTTCCCACGTGGGCCCCACCGCTCTCACCGTAGTTCATAGCACGCATTATTCAGGGCTAGACCTGATTATGAGATTTGGGCCCAATGAGCCGTGGAAGAAAGTGTTTGGGCCCATATTTATATACCTTAATTCTCTCTCTAATGGCGAAACCCCCACCAACCTCTGGCTCGACGCAAAACAACAGATGGTAAATGAAATTGAAAGCTGGCCATATAAGTTTCCAGCTTCAAAGGACTTCCTCTCATCAGATCAAAGAGGTAAAGTTGAAGGGAGATTGCTTGTACGAGAAAGGTTCATCAGTGATTCATTCAACCCTGTTAGCAATGCATATGTGGGATTAGCATCCAAAGGAGAGGCTGGATCCTGGCAAAGGGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCACAATTACTGACATACTCCCCGGAGAATATAATCTCTACTCCTGGGTCACCGGTTTCATTGGTGATTATAAATATGATACAGTCATCAACATAACCTCAGGGTGTGAAATTAATGTTGGTGAGATTGTGTATGAGCCACCAAGAGATGGACCAACATTGTGGGAAATAGGTATCCCTGATCGATCAGCTGCTGAGTTCTTTGTTCCTGATCCAAATCCAAAGTACATTAATAGACTTTATGTAAACCATCCAGACAAGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTGTATCCAAAAGAAGATCTAATTTACACCGTTGGCAGCAGTGATTACAGAAAAGATTGGTTCTTTGCTCAGGTTAACAGGAAGAAAGGGAATAACACGTACCAACCAACGACATGGCAAATTATTTTCAATCTTGATAATGTGAATACCAATGCTACCTACAAATTACGAGTGGCTTTGGCATCTGCACATTACGCTGAGCTACAGATTCGGGTAAACAATATTTCAGAAACAGACACACCTTTGTTTACAAGTGGACAAATTGGATCGGAGAATACAATAGCAAGACATGGAATTCATGGGCTCTATTGGCTATACAGTGTTGATATACAAGGAAATCTTCTGGAGAAGGGAAACAATACCATATTTCTAACTCAGCCATTAAACACAAGCCCATTCCAGGGAATTTTGTATGACTATATTAGATTAGAAGCACCAAATTGTACAGATCATCAAAATTTTACATTCTTCTAG 1947 0.4191 MIQVIMDNGIVQVNISNPEGMVIGIQYNGMDNLLEVINEESDRGYWDMVWDDGTNIGPTKERKKRKKGQFDRMEATNMTVIVETEEQVELSFTRMWDSSMEGDYPPLNIDKRFIMLRGSSGFYTYAIYERLKEWPGFNLSNTRVAFKLRKDKFQYMAVADNRQRFMPLPDDRENGRGQALAYPEAVLLVNPVEPQFRGEVDDKYQYSCESRNNRVHGWISLDEPSHSQSTGFWLITPSFEFRNGGPLKQYLASHVGPTALTVVHSTHYSGLDLIMRFGPNEPWKKVFGPIFIYLNSLSNGETPTNLWLDAKQQMVNEIESWPYKFPASKDFLSSDQRGKVEGRLLVRERFISDSFNPVSNAYVGLASKGEAGSWQRESKGYQFWTITDDKGYFTITDILPGEYNLYSWVTGFIGDYKYDTVINITSGCEINVGEIVYEPPRDGPTLWEIGIPDRSAAEFFVPDPNPKYINRLYVNHPDKYRQYGLWERYADLYPKEDLIYTVGSSDYRKDWFFAQVNRKKGNNTYQPTTWQIIFNLDNVNTNATYKLRVALASAHYAELQIRVNNISETDTPLFTSGQIGSENTIARHGIHGLYWLYSVDIQGNLLEKGNNTIFLTQPLNTSPFQGILYDYIRLEAPNCTDHQNFTFF* 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1126 648 Pfam Rhamnogalacturonate lyase family 3 200 IPR010325 -
Aev08g1126 648 Gene3D - 443 635 - -
Aev08g1126 648 Pfam Polysaccharide lyase family 4, domain II 360 431 IPR029413 -
Aev08g1126 648 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 3 637 - -
Aev08g1126 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 637 - -
Aev08g1126 648 CDD RGL4_M 336 435 IPR029413 -
Aev08g1126 648 CDD RGL4_C 447 635 - -
Aev08g1126 648 Gene3D - 333 432 - -
Aev08g1126 648 SUPERFAMILY Starch-binding domain-like 355 432 IPR013784 GO:0030246
Aev08g1126 648 CDD RGL4_N 3 296 - -
Aev08g1126 648 Pfam Polysaccharide lyase family 4, domain III 445 634 IPR029411 -
Aev08g1126 648 SUPERFAMILY Galactose-binding domain-like 442 635 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1126 Aev-Chr8 6911624 6917345 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1126 3 638 Polysaccharide Lyase AT1G09890 64.734 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1126 K18195 - gmx:100786488 1032.32