Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1100 ATGACGCGGACGAAGATAAAGATAAAGAAGATCGACAATATAACGGCGAGGCAGGTAACGTTCTCGAAGAGGAGGAGAGGGCTGTTCAAGAAAGCGCATGAGCTCTCTGTGCTGTGCGATGCTGATGTTGGCCTCATTGTTTTCTCTGCCACTTCCAAGCTCTTTGATTATGCTAGCTCCAGCATGAAGGACATAATTACAAGGTATAATACGCACTCTCATGATAACAACAAATTGGATCGATCTTCTCTATCACAGCAGCAGCTTGAGGGTGATAGCGCTAAATTGAATCAGGAAGTTGCAGAAAGAACGCAGGAACTAAGGAGGATGAATGGCGAGGATCTTCAAGGACTTGACTTTAATGAGTTGCAGCAATTGGAGAAAACACTTGAAAAAGGACTAAAACGTGTAATTGGAACAAAGGAAGAGCGGATTATGGGTGAGATTTCTGAACTTCAGAAAAAGGGGATGATGTTGGAAGAAGAGAACCAGAGGTTAAAGCAGAAGGTGGCTATTCTGTGTAAAGGGAAAACCCCGATTGTTATTGACATGAATGAAAGTGCTTCATTAGAGTCTTCTATCAATAACATTAGCAGTTGCATCAGTGATCCTCCTCTTGAGGATGATTCCTCTGACACTTCTCTTAAGTTAGGCTTGCCCTTCTCTAACTGA 672 0.4271 MTRTKIKIKKIDNITARQVTFSKRRRGLFKKAHELSVLCDADVGLIVFSATSKLFDYASSSMKDIITRYNTHSHDNNKLDRSSLSQQQLEGDSAKLNQEVAERTQELRRMNGEDLQGLDFNELQQLEKTLEKGLKRVIGTKEERIMGEISELQKKGMMLEEENQRLKQKVAILCKGKTPIVIDMNESASLESSINNISSCISDPPLEDDSSDTSLKLGLPFSN* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1100 223 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev08g1100 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 MobiDBLite consensus disorder prediction 80 94 - -
Aev08g1100 223 CDD MADS_MEF2_like 12 75 IPR033896 GO:0000977|GO:0045944
Aev08g1100 223 Coils Coil 123 143 - -
Aev08g1100 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Aev08g1100 223 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Aev08g1100 223 Coils Coil 86 113 - -
Aev08g1100 223 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev08g1100 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev08g1100 223 MobiDBLite consensus disorder prediction 73 94 - -
Aev08g1100 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 217 - -
Aev08g1100 223 Coils Coil 149 169 - -
Aev08g1100 223 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1100 Aev-Chr8 6703033 6707551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1100 1 221 MADS-box Gene Family AT2G22540 52.301 5.81e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev08g1100 K-box 3.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1100 - - gmx:100776749 288.115