Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1070 ATGTCCACTCACTGCACCAACAGGGACTGCCCCCCTGTTCCCACCGCCACTTCCCCTCATGGCCTCCTCCTCCTCCTCTTTCTCCTCCTTCTCGCTCCGTTGCCGGCCCCCGCGCAGCTCCCCAACGCGCTGTCTCCGCCGCCGCCGGACACCATGTCTAAGGTGAAGTTCGACAAGTCCATGGCCATCGTGCTGGTGGTCCTAGTGGTCGTCTTCTTCCTCCTCGGATTCCTCTCCGTCTACACGCGCCACTGCGCTGAGCGCAGGATGAGAGGGAGGTTCGACCTATCCATCCCAATCGTCGGGAGCGGCGGGCGGCACCGTGGGCTTGACCCGGAGATCATCGACACGTTCCCGACTTTCGTCTACTCCGCCGTGAAGGGACAGAAGATAGGGCGGGCCACGCTAGAATGCGCCGTGTGCCTCAACGAGTTCCACGACGACGAAACGCTGCGTTTGATCCCAAAGTGCAACCACGTGTTCCACCCCGATTGCATCGATGCTTGGCTTGTTAACCACTCGACCTGCCCCGTTTGCCGCGCCAATCTAATTCCCACGCCCGGTGATACCTCTGTGGCCGTTCAGATCCAGGATCCTGAATCCAACGGCTCGGGTGCACCCGAACCTGGATCCGAACCAAACACCCAACCTCACGTCGTTAACGTTGACGGTAACGGTAACGGAGGAGGGGGAATAACGGAGTCTCCAAAGGTGGATAATTCGGTTAATCAGAGCCGTCCGATTCGGTCAAGGTCAACGGGGTTTAGGATTGGGAATTTGTTTCCGCGGTCGCACTCGACGGGTCACTCGCTGGTCCAACCGGGGGAGAGCTTGGAGCGGTTCACGCTGAGGCTGCCGGAGGAGGTGAGGAACCGGCTGCTGGTGAGTTCGACGCCGAGGCGCACCGCGAGCCAAGGCGGCGCGGCTTTCGCGCGTGAGAGCAGCGTGAGGAGGGGTTACAGGACGAGGAGCGTTGGTGCCGGGAGGAGTTACCTACAGTACGAGCGGTTCGGGCGGCTGGAGCGGCGCGGCTTCAATTGGACGCCGCCTTTTTTGAGCAGGGCAGGGTCGACGAGGTCGCCGAAGGCGGAGCGAAACAAGGAGGCGGTGGTGGAAATTGGTGAACGGTCTTCGGATCGGTTATTTGCCGGTGGTGAGATTTAG 1164 0.6117 MSTHCTNRDCPPVPTATSPHGLLLLLFLLLLAPLPAPAQLPNALSPPPPDTMSKVKFDKSMAIVLVVLVVVFFLLGFLSVYTRHCAERRMRGRFDLSIPIVGSGGRHRGLDPEIIDTFPTFVYSAVKGQKIGRATLECAVCLNEFHDDETLRLIPKCNHVFHPDCIDAWLVNHSTCPVCRANLIPTPGDTSVAVQIQDPESNGSGAPEPGSEPNTQPHVVNVDGNGNGGGGITESPKVDNSVNQSRPIRSRSTGFRIGNLFPRSHSTGHSLVQPGESLERFTLRLPEEVRNRLLVSSTPRRTASQGGAAFARESSVRRGYRTRSVGAGRSYLQYERFGRLERRGFNWTPPFLSRAGSTRSPKAERNKEAVVEIGERSSDRLFAGGEI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1070 387 SUPERFAMILY RING/U-box 132 190 - -
Aev08g1070 387 MobiDBLite consensus disorder prediction 234 273 - -
Aev08g1070 387 MobiDBLite consensus disorder prediction 193 273 - -
Aev08g1070 387 SMART ring_2 138 179 IPR001841 -
Aev08g1070 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Aev08g1070 387 Pfam Ring finger domain 137 180 IPR001841 -
Aev08g1070 387 PANTHER RING-H2 FINGER PROTEIN ATL11 23 309 - -
Aev08g1070 387 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Aev08g1070 387 MobiDBLite consensus disorder prediction 193 222 - -
Aev08g1070 387 MobiDBLite consensus disorder prediction 297 317 - -
Aev08g1070 387 CDD RING-H2_PA-TM-RING 137 180 - -
Aev08g1070 387 PANTHER RING FINGER DOMAIN-CONTAINING 23 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1070 Aev-Chr8 6504262 6505425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1070 21 355 Rapid Response to Elicitors AT3G05200 40.346 3.00e-65 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1070 K10664 - gmx:100815982 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g1070 08 6504262 6505425 Aev08g1070 08 6504262 6505425 ECH