Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g1049 ATGAGTGAGACGGTTACTCTTCATGCACAAACAATTATTAGGACATCGGCTGCTGCTTCTTCTTCTTCTACTACTAATTTTTGTTTTGATGCCATGGCTTACCCTTACCCGCATTACCGGCCACAGTTCGGAGACACGACATTCACCAAGTTGTTTGTGGGAGGACTTGCTTGGGAGACTCCCACTGAAGAACTCCGCAAATACTTCGAGCAGTTTGGGGACATCCTTGAGGCTGTCATAATCACTGACAAGAACACAGCAAAATCCAAAGGCTACGGATTCGTAACATTTCGAGATCAGGAATCAGCGAGAAGGGCTTGTGCTGATCCGAACCCAGTAATAGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGGAGGACTAGACCATCTCCACCCCGAGGAAGGAACTATATGGCTCAAGGTGGAGCAGCAGCAGCAGCACAGGGTGGTGCGGCTTCATACGGCGGTGTTCCGGGAACAGGACCACCACCATCACTGCCACCACCACCGCCTCTGCTCTACCCACCACCGTATGGCTACCCAACCTACACTCCTGATTATGGTTACCACCAAGCAACAATGTACAGCCCACAGATACAGAATCCACAATACTATCAACAAATGTATGGTGGATCATCATCATCCACTACAATGGGCTCCCCATATTACTATGGCTATTCAGTGCCAAGAAGCACATTGATGTCTTCACCACAAGCAGCAGGAGCAGGAAATCGCATGCCACCAGCTGGACCCTCTTATCTATACTACCCTGCTACTACTCCTTTGGAAGGCTCCTTCTCTATTAGCTATCACCATCCTCTCCAACAACCACCAATAAGGCAACCCTTCCCTTCCCCTACTGATGTACAGAGTCAGCAGCGTGGGTCGTCTGAGACAGGAGGAGGAGGAGGAGGAGGAGTTATAACATCGGAAGGGGGGAATTGA 951 0.4932 MSETVTLHAQTIIRTSAAASSSSTTNFCFDAMAYPYPHYRPQFGDTTFTKLFVGGLAWETPTEELRKYFEQFGDILEAVIITDKNTAKSKGYGFVTFRDQESARRACADPNPVIDGRRANCNIASLGRTRPSPPRGRNYMAQGGAAAAAQGGAASYGGVPGTGPPPSLPPPPPLLYPPPYGYPTYTPDYGYHQATMYSPQIQNPQYYQQMYGGSSSSTTMGSPYYYGYSVPRSTLMSSPQAAGAGNRMPPAGPSYLYYPATTPLEGSFSISYHHPLQQPPIRQPFPSPTDVQSQQRGSSETGGGGGGGVITSEGGN* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g1049 316 CDD RRM_RBM24_RBM38_like 49 124 - -
Aev08g1049 316 Gene3D - 19 144 IPR012677 -
Aev08g1049 316 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 126 IPR000504 GO:0003723
Aev08g1049 316 PANTHER GEO13361P1-RELATED 36 307 - -
Aev08g1049 316 SUPERFAMILY RNA-binding domain, RBD 32 141 IPR035979 GO:0003676
Aev08g1049 316 MobiDBLite consensus disorder prediction 270 316 - -
Aev08g1049 316 MobiDBLite consensus disorder prediction 287 301 - -
Aev08g1049 316 SMART rrm1_1 50 122 IPR000504 GO:0003723
Aev08g1049 316 PANTHER - 36 307 - -
Aev08g1049 316 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 108 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g1049 Aev-Chr8 6361706 6365768 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g1049 45 125 C2H2 Transcription Factor Family AT2G19380 39.506 2.85e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g1049 K25006 - gmx:100794651 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g1049 08 6361706 6365768 Aev08g1049 08 6361706 6365768 ECH