Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0987 ATGATGGTTCACTCACAGAAGAGAAGAGAAAAGAGAAAGATGGCACAAACGCTGGCAATTGCAATGCCCGTGGCTCCCTCTGTCGCTCTCATCTCCAATTCCAAATCCCTTTCTAGAACCGTCGCCTTTCCTGTTCTCGCCCCTCCCAAGCTTAATGGTCTAAGCATCCAGTGTGTTCGTGTTGGAGGTGTAGAGATTCCTAACAACAAGCGAATTGAGTACTCTCTGCAGTACATCCATGGGATTGGGAGGAGCAGAGCTCGCAAAATCCTCTGTGATATCAGCATGGACAACAAAATCACTAAGGATCTCAGCGAGGAGGAACTCATCACGCTCAGGGATGAAGTCTCCAAATTCATGATTGAAGGCGACCTCAGGCGGTTTAATGCGCTTAACATAAGGAGACTGAAGGAGATTCAGTGCTACAGAGGGATAAGGCACATTCAGGGGCTCCCCTGCAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTCCTGGCAAAAAGAAGAAGTAG 537 0.4842 MMVHSQKRREKRKMAQTLAIAMPVAPSVALISNSKSLSRTVAFPVLAPPKLNGLSIQCVRVGGVEIPNNKRIEYSLQYIHGIGRSRARKILCDISMDNKITKDLSEEELITLRDEVSKFMIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIPGKKKK* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0987 178 SUPERFAMILY S13-like H2TH domain 59 170 IPR010979 GO:0003676
Aev08g0987 178 Gene3D 30s ribosomal protein s13, domain 2 128 178 IPR027437 -
Aev08g0987 178 PANTHER 37S RIBOSOMAL PROTEIN SWS2, MITOCHONDRIAL 8 177 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev08g0987 178 ProSitePatterns Ribosomal protein S13 signature. 143 156 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev08g0987 178 Pfam Ribosomal protein S13/S18 60 164 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev08g0987 178 Gene3D - 59 127 - -
Aev08g0987 178 TIGRFAM uS13_bact: ribosomal protein uS13 60 169 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev08g0987 178 ProSiteProfiles Ribosomal protein S13 family profile. 61 167 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Aev08g0987 178 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 8 177 - -
Aev08g0987 178 Hamap 30S ribosomal protein S13 [rpsM]. 58 174 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0987 Aev-Chr8 5887124 5887873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0987 57 176 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.192 7.85e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0987 K02952 - egr:104450469 254.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev08g0987 08 5887124 5887873 Aev08g0987 08 5887124 5887873 ECH