Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0974 ATGGCGGAAACTCGGAGATCTACGGGCACAGTGAAATGGTTCAACGCGCAGAAGGGTTTCGGATTCATAGCTCCCGACGACGGTGGCGAGGATCTCTTCGTCCACCACACTTCCATCCAGTCCGACGGATACCGCACCCTCTCCGAAGGCCAGCCTGTGGAGTTCGCCGTCGATTACGGCGACGCTGGCAGAACCAAGGCCATTGATGTCACCTCCATGGCAAGATCTCGCCGTTTTGGTGGTTTTCGCGGCAGCGGCGGAAGAGGCAGAGGAGGTGGTCGGTACGGCGGGCGCTATGGCGGCGGTGAAGGCCGCGACGATGGTTACGGTTACGGTTACGGGTACGGTAGAGGCGGAGGTGGTGGTCGGAGAGGAGGAGGAGGAGGTTACGGCGGTGGTGGAGGAGGTGGCGGGTACGGTGGTGGTGGAGGTCCTGAGTGTTACAATTGTGGACGAATTGGTCACCTAGCGAGAGATTGTTACCACGGACAAGGTGGTGCTGGTGGCGGGAATCGGAGACGCGGCGGCGGTAGTGGTGGCGGCGGAGGCGGCGGTGGCGGAGGTTGTTTTAACTGTGGGGAAGAAGGGCATTTTGCGAGGGAATGTCCCAATGTTGAAAAATGA 624 0.6026 MAETRRSTGTVKWFNAQKGFGFIAPDDGGEDLFVHHTSIQSDGYRTLSEGQPVEFAVDYGDAGRTKAIDVTSMARSRRFGGFRGSGGRGRGGGRYGGRYGGGEGRDDGYGYGYGYGRGGGGGRRGGGGGYGGGGGGGGYGGGGGPECYNCGRIGHLARDCYHGQGGAGGGNRRRGGGSGGGGGGGGGGCFNCGEEGHFARECPNVEK* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0974 207 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Aev08g0974 207 Pfam Zinc knuckle 146 160 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 Pfam Zinc knuckle 188 204 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 PANTHER COLD SHOCK PROTEIN 1 1 205 - -
Aev08g0974 207 ProSiteProfiles Zinc finger CCHC-type profile. 147 160 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 Gene3D - 123 176 - -
Aev08g0974 207 Gene3D - 1 71 IPR012340 -
Aev08g0974 207 Gene3D - 185 207 - -
Aev08g0974 207 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 Pfam 'Cold-shock' DNA-binding domain 8 72 IPR002059 GO:0003676
Aev08g0974 207 SMART csp_8 8 73 IPR011129 GO:0003676
Aev08g0974 207 SUPERFAMILY Nucleic acid-binding proteins 5 72 IPR012340 -
Aev08g0974 207 SUPERFAMILY Retrovirus zinc finger-like domains 139 204 IPR036875 GO:0003676|GO:0008270
Aev08g0974 207 CDD CSP_CDS 8 71 IPR002059 GO:0003676
Aev08g0974 207 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Aev08g0974 207 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Aev08g0974 207 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Aev08g0974 207 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 205 - -
Aev08g0974 207 ProSiteProfiles Zinc finger CCHC-type profile. 189 204 IPR001878 GO:0003676|GO:0008270
Aev08g0974 207 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0974 Aev-Chr8 5787659 5788282 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aev08g0974 CSD 3e-25 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0974 - - pda:103701257 139.043