Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0939 ATGGCTGAGATTATCTCTCCCATGGACATCGACGGCGACGACCGCACTTTCTCAGCCAAGCCTGATAAGGGCAAGAGCGTAGCCGTCTCCGCTAACACTTCCGCCGACGGCAAGGCCACTCCGTGGGTCGAGAAGTACAGACCTCAGTCCCTTGACGACGTCGCAGCTCACCGTGACATCGTTGACACCATTGATAGGCTGACCACTGAGAACAGACTGCCTCACCTTCTATTGTATGGTCCTCCTGGCACGGGCAAAACTTCGACTATACTTGCCGTTGCACGCAAGCTGTATGGTGCACAATACCACAATATGATTTTGGAGCTGAATGCATCTGATGATCGAGGAATTGACGTTGTACGGCAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTGTAAAGTCCTCTGTAAAACTGGTCTTGCTAGATGAAGCAGATGCAATGACAAAGGATGCCCAATTTGCACTACGTAGAGTGATTGAGAGATATACCAAAAGTACTAGGTTTGCACTTATCTGTAATCATGTAAATAAGATCATTCCAGCACTGCAATCGAGATGCACTAGGTTTCGGTTTGCCCCTCTTGATGATGTCCATGTCACTGATAGACTGAAACATGTCATTAAGGCTGAAGGGCTTGATGTTGAAGACAGTGGCTTAGCTGCACTTGTTCGGCTTAGCAATGGTGATATGAGGAAAGCTTTGAACATTCTTCAGTCAACGCATATGGCTTCTCAGCAAATCACTGAAGAAGCTGTTTACCTGTGCACCGGAAACCCACTGCCCAAAGATATTGAGCAAATATCTTACTGGCTTCTAAATGAACAATTTGCAGATAGTTTCAAAAGAATACATGAAATGAAGACGAGGAAAGGATTGGCTCTAATAGATATTGTGAGAGAAGTGACAATGTTTGTTTTCAAGATTAAGATGCCTGCAGCGGTCCGAGTACAGTTGATTAATGATTTGGCAAACATAGAGTACAGATTAACTTTTGGGTGCAACGATAAGCTTCAGCTTGGATCGGTAATTGCTTCCTTTACACATGCTAGATCCGCACTGGTTGCAGCTGCCAAATAA 1092 0.4496 MAEIISPMDIDGDDRTFSAKPDKGKSVAVSANTSADGKATPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSSVKLVLLDEADAMTKDAQFALRRVIERYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDDVHVTDRLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIHEMKTRKGLALIDIVREVTMFVFKIKMPAAVRVQLINDLANIEYRLTFGCNDKLQLGSVIASFTHARSALVAAAK* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0939 363 SMART AAA_5 72 202 IPR003593 -
Aev08g0939 363 Pfam ATPase family associated with various cellular activities (AAA) 76 196 IPR003959 GO:0005524|GO:0016887
Aev08g0939 363 PANTHER REPLICATION FACTOR C SUBUNIT 5 35 359 - -
Aev08g0939 363 CDD AAA 60 198 - -
Aev08g0939 363 CDD HLD_clamp_RFC 199 261 - -
Aev08g0939 363 Gene3D - 202 263 - -
Aev08g0939 363 SUPERFAMILY post-AAA+ oligomerization domain-like 264 354 IPR008921 GO:0003677|GO:0006260
Aev08g0939 363 Gene3D - 34 198 IPR027417 -
Aev08g0939 363 MobiDBLite consensus disorder prediction 1 31 - -
Aev08g0939 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 257 IPR027417 -
Aev08g0939 363 Pfam Replication factor C C-terminal domain 264 350 IPR013748 -
Aev08g0939 363 Gene3D - 264 361 - -
Aev08g0939 363 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 35 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0939 Aev-Chr8 5561668 5565064 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0939 1 363 Core DNA Replication Machinery Family AT1G77470 78.167 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0939 K10756 - gmx:100805231 645.966