Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0742 ATGGCTGTTGCTGAGAATGCTGGGGCCAAAATCGGTTCTTCCAGTCAGAATCTGGGTAACAGTGTAGTGTCATCGGACACCGCTGAGGTTGAGAAATCGAAGGGTAGGGGTGGTGGTGGTTCCGTCAACGGCGATCAGAACCAGAATGGGGTGTTCAACCACCAGGATAGAGCTGCGAACACTGTGTCAGTCCCGAATGGTAACTACAAGGCTCAGATGCGAAATGGGTTTGACGGAAATGGGGTCCAGAACCAGCAGCAGATGGTGGCGGTCAACAACAATGATGGTTTTGGGGTTAATGGGGAGAACGGGGGTGAGAGTTTCAAGAGGGATATGAGGGATTTGGAGGAGCTTCTCTCGAAGCTGAACCCCATGGCTGAGGAATTTGTTCCTCCTTCTCTAGCAAACAATCATGGGTACTTGGCTGGAGCTGGTGCTGGGTTTGGCTTCGTTAACAATTTTTTGCTCCAGAATGGTTTTGGCAATGCTAATGGGCAGACTAACAGGAGGAGGAAGAATGGCTATAGTCATGGGAAGCGACGATCAAATCATAAGATGGATATGGAGAAAAGAGATGAGATGATTAGGAGGACTGTTTATGTGTCTGACATTGATCAGCTGGTTACTGAAGAGCAGCTCGCAGCTCTCTTTCTTAACTGTGGCCAGGTCGTTGACTGTCGTGTATGCGGGGATCCTAATTCCATTCTTCGGTTTGCCTTCATTGAATTTACCGATGATGATGGTGCTAGGGCTGCTTTGAACCTCTCTGGAACTATGCTTGGATATTATCCACTGAGGGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCGACATTTCTTCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACTATCTATTGCACCAATATCGACAAGAAGCTCACTCAAGCAGATGTCAAACACTTCTTTGAATCAATTTGTGGAGAGGTTCATCGCTTGAGGCTTCTCGGGGATTACCATCACTCAACTCGAATTGCATTTGTTGAGTTCGCAATGGCTGAGAGTGCAATTGCAGCTCTGAGCTGCAGCGGTGTGATTTTGGGCGCACTGCCTATAAGGGTAAGTCCATCGAAGACACCAGTCCGCTCCCGCGCTCCTCGTGCTCCTCCTATGCACTGA 1152 0.4852 MAVAENAGAKIGSSSQNLGNSVVSSDTAEVEKSKGRGGGGSVNGDQNQNGVFNHQDRAANTVSVPNGNYKAQMRNGFDGNGVQNQQQMVAVNNNDGFGVNGENGGESFKRDMRDLEELLSKLNPMAEEFVPPSLANNHGYLAGAGAGFGFVNNFLLQNGFGNANGQTNRRRKNGYSHGKRRSNHKMDMEKRDEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDDDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFAMAESAIAALSCSGVILGALPIRVSPSKTPVRSRAPRAPPMH* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0742 383 Pfam Ataxin-2 C-terminal region 119 133 IPR009818 -
Aev08g0742 383 SUPERFAMILY RNA-binding domain, RBD 167 273 IPR035979 GO:0003676
Aev08g0742 383 Gene3D - 281 376 IPR012677 -
Aev08g0742 383 Gene3D - 157 274 IPR012677 -
Aev08g0742 383 MobiDBLite consensus disorder prediction 9 28 - -
Aev08g0742 383 MobiDBLite consensus disorder prediction 1 52 - -
Aev08g0742 383 SUPERFAMILY RNA-binding domain, RBD 284 376 IPR035979 GO:0003676
Aev08g0742 383 CDD RRM1_CID8_like 195 274 IPR034823 -
Aev08g0742 383 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 12-LIKE 1 380 - -
Aev08g0742 383 MobiDBLite consensus disorder prediction 163 187 - -
Aev08g0742 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Aev08g0742 383 CDD RRM2_CID8_like 290 371 IPR034825 -
Aev08g0742 383 SMART rrm1_1 198 268 IPR000504 GO:0003723
Aev08g0742 383 SMART rrm1_1 295 366 IPR000504 GO:0003723
Aev08g0742 383 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 380 - -
Aev08g0742 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 358 IPR000504 GO:0003723
Aev08g0742 383 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 262 IPR000504 GO:0003723
Aev08g0742 383 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 370 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0742 Aev-Chr8 4273915 4277086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0742 196 358 Eukaryotic Initiation Factors Gene Family AT1G34140 26.347 1.74e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0742 - - aip:107622933 617.461