Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0685 ATGTTAGGGTTGCGTGTTGAGGAGGAGGGACTTTCATCTGAATCGGTGCCAATGGATAAGGAGAAGGAATTGGTGGAATTCTACGAGGCCGCTAAGAAGGCCGCCGATGCTGCCAGTTCCCCCGATGCCGGCAAACACGAAGAAAGCCGATGCATCGATGCGCTCGAACAACTCAAGAAATTCCCCGTCAATTATAAGATTCTCGTCAACACCCAGGTGGGCAAACGTGTTAAACATCTCACAAAACATCCGAGGCAGAAAATTCGGGAGTTTTCTCATGACCTAGTTGAGATATGGAAAGATGTAATTTTAAAGGAAACAAACAAAAACAAGAATGGTGGATCTGATAATAAGGTTGAGTCACCAAACAGGGAGAGAGCTCAATCTGGGAAATTTCAGAGGAGTTCCTCGGTGAAGGTTGAGAAAACTGATAGGAACGGTACATCAAGACCAAGCTCAGAAAAGGTTCAAAATGTGGATGTCAAAAGTGAGAAATCTCACCGATCTGAAAATGTCAAGGTGGAAAAGATAGCCAAGGATGAGAAGCAGCAAGTTTCTTCTGGAGCAAAGAAAATGTCATCAAGCACTATTGCTCCCCCGAAGCTGAAGACTATGGTTAAATCTAATGATTCAGTGCGAGACAAAATAAGGGAACTTCTCCACGAGGCTTTATCCAGGGTTGCTGGAGAGGCTGATGAGGATATGATGGATGAAGTAAATGCTAGCGACCCTATTCGTGTTGCTGTCACAGTGGAGTCTGTATTATTTGAGAAGTGGGGTCCTTCAAATGGAGCCCAGAAGGTTAAGTACAGGTCTCTAATGTTTAACCTGAAGGATCAGAATAACCCAGATTTCCGGAGAAAAGTTCTGCTCGGTGTTGTTGAGCCAGAGCGGCTGATCAACATGAGCACAGCTGAGATGGCTAGTGAGCAGAGGAAGCAGGAGAATGAGAAAATCAAAGAGAAAGCCTTGTTTGAATGTGAACGTGGAGCTCAACCGAAAGCGACGACCGATCAGTTCAAGTGTGGACGATGCGGCCAAAGGAAATGCACCTATTACCAGATGCAGACGCGCAGTGCTGATGAACCTATGACGACCTATGTCACTTGTGTTGTCTGCAGTAACCGTTGGAAGTTCTGTTAG 1143 0.4558 MLGLRVEEEGLSSESVPMDKEKELVEFYEAAKKAADAASSPDAGKHEESRCIDALEQLKKFPVNYKILVNTQVGKRVKHLTKHPRQKIREFSHDLVEIWKDVILKETNKNKNGGSDNKVESPNRERAQSGKFQRSSSVKVEKTDRNGTSRPSSEKVQNVDVKSEKSHRSENVKVEKIAKDEKQQVSSGAKKMSSSTIAPPKLKTMVKSNDSVRDKIRELLHEALSRVAGEADEDMMDEVNASDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGVVEPERLINMSTAEMASEQRKQENEKIKEKALFECERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCSNRWKFC* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0685 380 CDD Zn-ribbon_TFIIS 333 379 - -
Aev08g0685 380 MobiDBLite consensus disorder prediction 157 186 - -
Aev08g0685 380 MobiDBLite consensus disorder prediction 108 198 - -
Aev08g0685 380 Pfam Transcription factor S-II (TFIIS) 340 378 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aev08g0685 380 Pfam Transcription factor S-II (TFIIS), central domain 209 326 IPR003618 GO:0006351
Aev08g0685 380 ProSitePatterns Zinc finger TFIIS-type signature. 342 377 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aev08g0685 380 Pfam TFIIS helical bundle-like domain 54 102 IPR017923 -
Aev08g0685 380 Gene3D - 309 380 - -
Aev08g0685 380 Gene3D - 162 308 IPR036575 GO:0006351
Aev08g0685 380 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 12 118 IPR035441 -
Aev08g0685 380 CDD TFIIS_I 47 103 - -
Aev08g0685 380 TIGRFAM TFSII: transcription elongation factor S-II 36 380 IPR006289 GO:0003676|GO:0005634|GO:0006368
Aev08g0685 380 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 21 380 - -
Aev08g0685 380 SMART Cys4_2 340 379 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aev08g0685 380 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 21 380 - -
Aev08g0685 380 SMART mid_6 210 318 IPR003618 GO:0006351
Aev08g0685 380 MobiDBLite consensus disorder prediction 108 127 - -
Aev08g0685 380 ProSiteProfiles Zinc finger TFIIS-type profile. 338 378 IPR001222 GO:0003676|GO:0006351|GO:0008270
Aev08g0685 380 SMART TFS2_5 27 105 IPR003617 GO:0005634
Aev08g0685 380 SUPERFAMILY Zinc beta-ribbon 318 378 - -
Aev08g0685 380 PIRSF TFIIS 18 380 IPR035100 -
Aev08g0685 380 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 44 118 IPR035441 -
Aev08g0685 380 SUPERFAMILY Elongation factor TFIIS domain 2 202 310 IPR036575 GO:0006351
Aev08g0685 380 ProSiteProfiles TFIIS N-terminal domain profile. 29 106 IPR017923 -
Aev08g0685 380 ProSiteProfiles TFIIS central domain profile. 212 335 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0685 Aev-Chr8 3975497 3977720 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Aev08g0685 TFIIS_M 2.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0685 K03145 - gmx:100811982 563.148