Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev08g0620 ATGATTTTCGGTGATTTATCCGTTCCACACGGTATATATTTGATCCGCGATTTGTTTACTGCCTTATTGCTAGCGTTAAGAGAGACTCCGGAGGAACCCCGCAAGCCCGTCCTATCTGATTTTATTATACTCATCTGGAAGGGAAAACCCTCCAAAACCCTAGAATTCGAGAATCCTCTCTCAATCTCTGAGATATACACACTGACTCAGAGAGTGAGATTGAGAGCTGCACCTGAACCAATGGACTTTGACGAGTACGATTACTTGGAGAAGACGGTGGAGGACAAGGACGACACCAGAGATTCCTCCCGGAAGAAGAAGGACACCTCCGAGAGGTCCTACAGGAAGCGCGACGAGCTCGACGATGATGATCTCGACGCCGGAGGGGACGAGAAGAGGAGCAAGAGGTCCAGGGCTGACGACGAGAACGGCTCCAAGAGGGATCGTGACGACCGCGATAGGGAGCGCTCCAGCCGCGACAAGGACCGCCACCGGAGCGACAGAGATAGGGATAGGGACAGGGACGGTGAGAGGAGTAGCCGAGACAGAGAAAGAGACAGGGACAGAGACGGTGAGAGGAGCGGTCGAGACAGAGATAGAGACGGCGAGAGGAGTAGCAAAGATAGAGACAGAGACAGGGACAGAGAGAAGGAGAAGGATAGGGACAAGGAGAGGGATAGGAGGGAGAAGGACAAAGAGAGGGACAGGCGAGAGAGGGAGAAGGAGAAGGAACGGGAGAGAAGGGAGAGGGAGAGAGAACGAGAGGAGAGAGAGAGGTCGAGGAGGAGCAGGAGTCGTTCTGAGCGAGACAGAGAGAAGGAACGAGATTTTGAATCCAGAGATGGCAGGAGATATAGGGAGAAGAAAGAGGCTGTGGAGCCTGAGGCAGACCCAGAAAGGGATCAGAGAACTGTTTTTGCTTACCAGATGCCCCTAAAGGCAACCGAGAGGGATGTTTATGAGTTCTTCTCTAAAGCTGGCAAGGTGAGGGATGTCCGTCTTATCATGGATAGGAACTCAAGGCGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCTATGGCAATTGCTCTCTCCGGCCAACTTCTCCTTGGACAACCTGTTATGGTAAAACCCTCTGAAGCTGAAAAGAACCTTGTTCAATCTAATACTACTAGTGGAGCTGCTGGTGTGGCAGGGCCATATGGAGCTGTGGACAGGAAACTGTATGTGGGGAACCTTCATTTTAACATGACTGAGAGTCAATTACGAGAGATTTTTGAGCCATTTGGTCCTGTGGAGCTTGTACAACTTCCTCTTGACCTGGAGACAGGCCATTGCAAGGGTTTCGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGATATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACAGATCATGTTGGAAGCCAAGATACAACAGCAAAATCTGCAGACTTGGATGATGATGAAGGTGGATTGTCTTTAAATGCCCATTCAAGAGCATTGCTTATGCAGAAGCTGGATCGCTCTGGCATTGCTGCAAGCATTGGTGCATCGATTGTGAATGGGTCAGCCCCTGCTCAGCAGGCTGTTAGCTTGCCTACTGGTAATCCAGGTATGATACCAGCACCAGCTCTCCCAACGCAACTTGTGCCTACCCCAGTGGTGGCTGAACCTGTTGGAAACCCATCCGAGTGTTTGCTGTTGAAGAATATGTTTGATCCAACCACTGAGACAGAACCAGATTTTGATCTAGACATCAAAGAGGATGTGGAAGAAGAGTGTTCTAAATTTGGGCGAGTGAAACATATTTATGTTGACAAAAGAAGTGCAGGTTTTGTGTATTTGCAGTTTGAAACAGTGGAAGCAGCCAGTGCTGCTCAACGTGCTATGCACATGAGGTGGTTTGCACGAAGATTGATTTCAGCTATCTTCATGATGGATAGGTATCAGAGGGTGGAGAAGCCCAAGGCAGAGAGTCCTATAAACGAGAACGAGATTCGCATAACCACTCAAGGAAGGATGAGGAATTATATCACCTATGCCACCACTCTCCTCCAGGAGAAAGGATCTGATGAAATTGTTCTTAAAGCGATGGGGCGCGCTATCAATAAGACTGTGATGATTGCTGAGCTCATCAAGAGAAGAATTGTTGGTCTTCATCAAAACACTGTTATCGGATCAACTGATATAACTGACACATGGGAGCCGCTAGAAGAGGGCCTTCTCCCTTTGGAGACTACTCGACATGTTTCAATGATCACAGTTACATTCTCAAAGAAAGAACTTGATACGTCCTCCACTGGGTACCAACCTCCTCTTCCAGCTGATCAAGTAAAACCTTTAAATGAATACGAAGAGGAAGGAGAAGGATCACCAAGGATGCGAGGAAGAGGGCGTGGTCGTGGAAGGGGCAGGGGTAGAGGAATGTACAATGGGGGTATGGAATATGGTGATGGTTGGGACGGTGGGCGTGGATATGGTGGCAGAGGGCGTGGCCGTGCAAGGGGTCGTGGTTTCCGGGGACGAGGACGAGGATATGGTGCCCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCACCACCACCTGTCCCACGTGGGCGGGGACGTGGAAGGGGACGAGGGCGTGGCCGTGGACGTAATTTTAGAATGGACGGAGGAGGCCGGGGAGCAGCTGCATGA 2721 0.4954 MIFGDLSVPHGIYLIRDLFTALLLALRETPEEPRKPVLSDFIILIWKGKPSKTLEFENPLSISEIYTLTQRVRLRAAPEPMDFDEYDYLEKTVEDKDDTRDSSRKKKDTSERSYRKRDELDDDDLDAGGDEKRSKRSRADDENGSKRDRDDRDRERSSRDKDRHRSDRDRDRDRDGERSSRDRERDRDRDGERSGRDRDRDGERSSKDRDRDRDREKEKDRDKERDRREKDKERDRREREKEKERERREREREREERERSRRSRSRSERDREKERDFESRDGRRYREKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLDIAGRTIKVSSVTDHVGSQDTTAKSADLDDDEGGLSLNAHSRALLMQKLDRSGIAASIGASIVNGSAPAQQAVSLPTGNPGMIPAPALPTQLVPTPVVAEPVGNPSECLLLKNMFDPTTETEPDFDLDIKEDVEEECSKFGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHMRWFARRLISAIFMMDRYQRVEKPKAESPINENEIRITTQGRMRNYITYATTLLQEKGSDEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTVIGSTDITDTWEPLEEGLLPLETTRHVSMITVTFSKKELDTSSTGYQPPLPADQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGMYNGGMEYGDGWDGGRGYGGRGRGRARGRGFRGRGRGYGAQPVGYYDYGEYDAPPPVPRGRGRGRGRGRGRGRNFRMDGGGRGAAA* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev08g0620 906 MobiDBLite consensus disorder prediction 792 808 - -
Aev08g0620 906 SUPERFAMILY RNA-binding domain, RBD 573 655 IPR035979 GO:0003676
Aev08g0620 906 SUPERFAMILY RNA-binding domain, RBD 404 482 IPR035979 GO:0003676
Aev08g0620 906 SUPERFAMILY AlbA-like 673 786 IPR036882 GO:0003676
Aev08g0620 906 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 498 594 IPR029123 -
Aev08g0620 906 MobiDBLite consensus disorder prediction 775 818 - -
Aev08g0620 906 SUPERFAMILY RNA-binding domain, RBD 296 384 IPR035979 GO:0003676
Aev08g0620 906 Gene3D - 236 390 IPR012677 -
Aev08g0620 906 MobiDBLite consensus disorder prediction 834 906 - -
Aev08g0620 906 CDD RRM1_RBM39_like 304 376 - -
Aev08g0620 906 TIGRFAM SF-CC1: splicing factor, CC1-like family 194 660 IPR006509 GO:0003723|GO:0005634|GO:0006397
Aev08g0620 906 MobiDBLite consensus disorder prediction 94 302 - -
Aev08g0620 906 PANTHER CC1-LIKE SPLICING FACTOR 81 189 - -
Aev08g0620 906 PANTHER CC1-LIKE SPLICING FACTOR 181 660 - -
Aev08g0620 906 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 181 660 - -
Aev08g0620 906 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 81 189 - -
Aev08g0620 906 CDD RRM2_RBM23_RBM39 407 479 - -
Aev08g0620 906 CDD RRM3_RBM39_like 575 657 - -
Aev08g0620 906 Gene3D - 673 775 IPR036882 GO:0003676
Aev08g0620 906 Coils Coil 223 270 - -
Aev08g0620 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 599 652 IPR000504 GO:0003723
Aev08g0620 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 477 IPR000504 GO:0003723
Aev08g0620 906 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 372 IPR000504 GO:0003723
Aev08g0620 906 Gene3D - 572 672 IPR012677 -
Aev08g0620 906 Gene3D - 401 497 IPR012677 -
Aev08g0620 906 SMART rrm1_1 577 654 IPR000504 GO:0003723
Aev08g0620 906 SMART rrm1_1 406 479 IPR000504 GO:0003723
Aev08g0620 906 SMART rrm1_1 304 376 IPR000504 GO:0003723
Aev08g0620 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 380 IPR000504 GO:0003723
Aev08g0620 906 Pfam Alba 676 740 IPR002775 GO:0003676
Aev08g0620 906 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 483 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev08g0620 Aev-Chr8 3558559 3567048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev08g0620 377 478 Eukaryotic Initiation Factors Gene Family AT4G34110 35.922 2.77e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev08g0620 K13091 - gmx:100802446 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g2873 03 28170411 28179760 Aev08g0620 08 3558559 3567048 PCT